miRNA display CGI


Results 101 - 120 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 106475 0.72 0.20767
Target:  5'- gCGCCCugggcgcacacggaGACGGGCCa-GCGGCuGGCGcGCg -3'
miRNA:   3'- -GCGGG--------------CUGUCCGGgaCGCCG-UCGC-CG- -5'
29369 3' -65 NC_006151.1 + 105718 0.7 0.277674
Target:  5'- gCGCCuCGACGGcGCCgUGCGcgcgccugaagcagcGCguGGCGGCg -3'
miRNA:   3'- -GCGG-GCUGUC-CGGgACGC---------------CG--UCGCCG- -5'
29369 3' -65 NC_006151.1 + 105544 0.72 0.209133
Target:  5'- gGCCCGagcuGCGGcacgacGCCCUGCGcGCgcuGGCGGCc -3'
miRNA:   3'- gCGGGC----UGUC------CGGGACGC-CG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 105256 0.66 0.513631
Target:  5'- uCGCCUggGACgAGGCCUgggaggacuuuggGCGcGCGcGCGGCc -3'
miRNA:   3'- -GCGGG--CUG-UCCGGGa------------CGC-CGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 105209 0.76 0.106135
Target:  5'- gCGCCaggaGGCGGacaCgCUGCGGCAGCGGCu -3'
miRNA:   3'- -GCGGg---CUGUCc--GgGACGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 105069 0.69 0.342224
Target:  5'- gCGCCCGagcuggacguGCAGGCCgucgaguggCUGCaccaGGC-GCGGCu -3'
miRNA:   3'- -GCGGGC----------UGUCCGG---------GACG----CCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 104885 0.67 0.445669
Target:  5'- gCGCCUGcugcGCgAGGUgguggacGCGGCGGCGGCg -3'
miRNA:   3'- -GCGGGC----UG-UCCGgga----CGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 104826 0.7 0.294142
Target:  5'- gCGCgCGAC-GGCCUcgccGCGGCGGaGGCg -3'
miRNA:   3'- -GCGgGCUGuCCGGGa---CGCCGUCgCCG- -5'
29369 3' -65 NC_006151.1 + 104585 0.72 0.229489
Target:  5'- aCGUgCuGCAGGCCg-GCGGCAgccGCGGCg -3'
miRNA:   3'- -GCGgGcUGUCCGGgaCGCCGU---CGCCG- -5'
29369 3' -65 NC_006151.1 + 104526 0.66 0.516405
Target:  5'- cCGCCgCGGCuuccccgaguacgAGGCCgaGCuggccgcccugGGCGcGCGGCg -3'
miRNA:   3'- -GCGG-GCUG-------------UCCGGgaCG-----------CCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 104380 0.68 0.372144
Target:  5'- cCGCUcucgCGGCuGGCCCgcaucGcCGGCGGCGuGCu -3'
miRNA:   3'- -GCGG----GCUGuCCGGGa----C-GCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 104267 0.76 0.122844
Target:  5'- aCGCCggcgcggCGGCGGGCCCgccgcugcagGCGcuGCAGCGGCu -3'
miRNA:   3'- -GCGG-------GCUGUCCGGGa---------CGC--CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 103797 0.69 0.320947
Target:  5'- gGCgCuGCAGGCCgCgcugucgGCGGCcguGGCGGCg -3'
miRNA:   3'- gCGgGcUGUCCGG-Ga------CGCCG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 103467 0.69 0.33502
Target:  5'- uGCCgGGCAcGGUgCUcGCGGCGcuGUGGCg -3'
miRNA:   3'- gCGGgCUGU-CCGgGA-CGCCGU--CGCCG- -5'
29369 3' -65 NC_006151.1 + 103231 0.66 0.496209
Target:  5'- gCGCgCGAUggAGGaCCugCUGCGGCacauccgcgccaugGGCGGCc -3'
miRNA:   3'- -GCGgGCUG--UCC-GG--GACGCCG--------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 102679 0.66 0.471038
Target:  5'- aCGCCguggacgCGGgGGcGCCCggcgcggGCGGC-GCGGCc -3'
miRNA:   3'- -GCGG-------GCUgUC-CGGGa------CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 102505 0.66 0.469265
Target:  5'- aCGCCgCGGCgcGGGaCCCcgGCGGCgucuacgaccagacGGUGGUg -3'
miRNA:   3'- -GCGG-GCUG--UCC-GGGa-CGCCG--------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 102378 0.68 0.395725
Target:  5'- gCGCCCGu--GGCCaaGCuGGCGcuggucGCGGCg -3'
miRNA:   3'- -GCGGGCuguCCGGgaCG-CCGU------CGCCG- -5'
29369 3' -65 NC_006151.1 + 101883 0.69 0.314078
Target:  5'- cCGCCgCcGCGGGUCCagaaGCGGCcgagcaugcccaAGCGGCg -3'
miRNA:   3'- -GCGG-GcUGUCCGGGa---CGCCG------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 101732 0.7 0.280783
Target:  5'- -aCCCGAU-GGCCCUGCcGCcggacccGGCGGCc -3'
miRNA:   3'- gcGGGCUGuCCGGGACGcCG-------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.