miRNA display CGI


Results 81 - 100 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 117800 0.66 0.472815
Target:  5'- aCGCCCGGCggggcgGGGCCCcacgcuuuaagaccCGGCcGgGGCg -3'
miRNA:   3'- -GCGGGCUG------UCCGGGac------------GCCGuCgCCG- -5'
29369 3' -65 NC_006151.1 + 132440 0.66 0.471926
Target:  5'- gCGCCUGcgcguGCAGGUagcgcagcaCCgcGCGGCAGUaGGCg -3'
miRNA:   3'- -GCGGGC-----UGUCCG---------GGa-CGCCGUCG-CCG- -5'
29369 3' -65 NC_006151.1 + 59212 0.66 0.471926
Target:  5'- aCGCgCG-UGGGCCCcgggaacgucUGcCGGCuGCGGCc -3'
miRNA:   3'- -GCGgGCuGUCCGGG----------AC-GCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 66055 0.66 0.471926
Target:  5'- uGCCUGucCAGGaCCCcGCGGaCGGCcGCc -3'
miRNA:   3'- gCGGGCu-GUCC-GGGaCGCC-GUCGcCG- -5'
29369 3' -65 NC_006151.1 + 102679 0.66 0.471038
Target:  5'- aCGCCguggacgCGGgGGcGCCCggcgcggGCGGC-GCGGCc -3'
miRNA:   3'- -GCGG-------GCUgUC-CGGGa------CGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 102505 0.66 0.469265
Target:  5'- aCGCCgCGGCgcGGGaCCCcgGCGGCgucuacgaccagacGGUGGUg -3'
miRNA:   3'- -GCGG-GCUG--UCC-GGGa-CGCCG--------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 81399 0.66 0.469265
Target:  5'- nCGCCCaGGuuGGCCaggGUGGCGuccccgccgaggucGCGGCg -3'
miRNA:   3'- -GCGGG-CUguCCGGga-CGCCGU--------------CGCCG- -5'
29369 3' -65 NC_006151.1 + 100416 0.66 0.480851
Target:  5'- gCGCgCCGACgcggGGGCgCUGCG-CGGCgugauGGCg -3'
miRNA:   3'- -GCG-GGCUG----UCCGgGACGCcGUCG-----CCG- -5'
29369 3' -65 NC_006151.1 + 71390 0.66 0.480851
Target:  5'- uGCCCGACGGGCuguuugCCUGagGGgAGgacgGGCg -3'
miRNA:   3'- gCGGGCUGUCCG------GGACg-CCgUCg---CCG- -5'
29369 3' -65 NC_006151.1 + 99076 0.66 0.480851
Target:  5'- gCGCCCG---GGCaCC-GUGGC-GCGGCg -3'
miRNA:   3'- -GCGGGCuguCCG-GGaCGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 9036 0.66 0.489858
Target:  5'- cCGCCCGcCGGggcGCCCcGCGuGCuccGGgGGCg -3'
miRNA:   3'- -GCGGGCuGUC---CGGGaCGC-CG---UCgCCG- -5'
29369 3' -65 NC_006151.1 + 142093 0.66 0.489858
Target:  5'- aCGCCCG-CAGGaCCUGCgcgGGCuG-GGUg -3'
miRNA:   3'- -GCGGGCuGUCCgGGACG---CCGuCgCCG- -5'
29369 3' -65 NC_006151.1 + 89157 0.66 0.489858
Target:  5'- gCGCCCGccucgggcgagGCGGGCgCgGgGGuCGGgGGCg -3'
miRNA:   3'- -GCGGGC-----------UGUCCGgGaCgCC-GUCgCCG- -5'
29369 3' -65 NC_006151.1 + 6386 0.66 0.488954
Target:  5'- uGCCUGAgcgaggcCGGGCgCCgagcGCGGagagcgGGCGGCg -3'
miRNA:   3'- gCGGGCU-------GUCCG-GGa---CGCCg-----UCGCCG- -5'
29369 3' -65 NC_006151.1 + 5522 0.66 0.487148
Target:  5'- gCGCCaaGCGGccgaggaucgagccGCCUcGCGGCGGCGGg -3'
miRNA:   3'- -GCGGgcUGUC--------------CGGGaCGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 37007 0.66 0.486246
Target:  5'- cCGCCCccCGGGCCCccgccgccgccgcGCGGCGcuCGGCc -3'
miRNA:   3'- -GCGGGcuGUCCGGGa------------CGCCGUc-GCCG- -5'
29369 3' -65 NC_006151.1 + 139567 0.66 0.480851
Target:  5'- gCGCCCGGuccgcgagcgccUGGGCUC-GCGcccccccgaGCGGCGGCc -3'
miRNA:   3'- -GCGGGCU------------GUCCGGGaCGC---------CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 137117 0.66 0.480851
Target:  5'- aCGCCUGGgGGcGCgCgacggcGCGGCGcgacGCGGCg -3'
miRNA:   3'- -GCGGGCUgUC-CGgGa-----CGCCGU----CGCCG- -5'
29369 3' -65 NC_006151.1 + 121300 0.66 0.480851
Target:  5'- cCGaCCgCGACGGGCgCUggagcGUGGaGGCGGCc -3'
miRNA:   3'- -GC-GG-GCUGUCCGgGA-----CGCCgUCGCCG- -5'
29369 3' -65 NC_006151.1 + 101396 0.66 0.480851
Target:  5'- gCGCCuucuuCGAC-GGCCuCUGgGcGCAGCGcGCc -3'
miRNA:   3'- -GCGG-----GCUGuCCGG-GACgC-CGUCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.