Results 41 - 60 of 283 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29369 | 5' | -58.1 | NC_006151.1 | + | 8679 | 0.66 | 0.756016 |
Target: 5'- cCGACGGUGGUGGCcGgGCgGGCGGUc -3' miRNA: 3'- -GUUGUCGUCGUCGuCgCGgUCGUCGu -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 81207 | 0.66 | 0.756016 |
Target: 5'- ---gGGCcGCAGUccgGGCGCCGGC-GCGu -3' miRNA: 3'- guugUCGuCGUCG---UCGCGGUCGuCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 108675 | 0.66 | 0.756016 |
Target: 5'- uCAGCAGCcggAGCGGCGGC-CCG--AGCAc -3' miRNA: 3'- -GUUGUCG---UCGUCGUCGcGGUcgUCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 71321 | 0.66 | 0.756016 |
Target: 5'- cCGGCAagcGCGGCGGCuGCGCCGacgaccucgccGUGGCc -3' miRNA: 3'- -GUUGU---CGUCGUCGuCGCGGU-----------CGUCGu -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 105358 | 0.66 | 0.756016 |
Target: 5'- aGACGGCgaccauggAGguGCuGGCGCUGcGCAGCGa -3' miRNA: 3'- gUUGUCG--------UCguCG-UCGCGGU-CGUCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 92129 | 0.67 | 0.702936 |
Target: 5'- gAACGGCcGCAucgcgcGCGGCGCCAaggccaucauggccGCGGCc -3' miRNA: 3'- gUUGUCGuCGU------CGUCGCGGU--------------CGUCGu -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 133381 | 0.67 | 0.695764 |
Target: 5'- uGGCGGCcggGGCGGCGGCcgggGCCgAGCgGGCGg -3' miRNA: 3'- gUUGUCG---UCGUCGUCG----CGG-UCG-UCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 81875 | 0.67 | 0.695764 |
Target: 5'- uCGAC-GC-GCAGgAGCGCCGGCgccgaGGCGc -3' miRNA: 3'- -GUUGuCGuCGUCgUCGCGGUCG-----UCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 69717 | 0.67 | 0.695764 |
Target: 5'- cCGGgGGCAGCAGC-GCGUCGauguggccccccGCGGCc -3' miRNA: 3'- -GUUgUCGUCGUCGuCGCGGU------------CGUCGu -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 58409 | 0.67 | 0.695764 |
Target: 5'- -cAUGGCGcGCAGCuGgGCguGCGGCAg -3' miRNA: 3'- guUGUCGU-CGUCGuCgCGguCGUCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 36639 | 0.67 | 0.692681 |
Target: 5'- --cCGGCGGCGGCGGCGCCcccuccgccggaggGGaCcGCGg -3' miRNA: 3'- guuGUCGUCGUCGUCGCGG--------------UC-GuCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 64090 | 0.67 | 0.704979 |
Target: 5'- cCAGCAGCAGCccgcacgagaagaGGUcguGGC-CCGGCGGUg -3' miRNA: 3'- -GUUGUCGUCG-------------UCG---UCGcGGUCGUCGu -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 57448 | 0.67 | 0.704979 |
Target: 5'- gCGGCGGCccccgcgucggccAGguGCcGCGCC-GCGGCGg -3' miRNA: 3'- -GUUGUCG-------------UCguCGuCGCGGuCGUCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 27008 | 0.67 | 0.706 |
Target: 5'- gCGAgAGCuGgAGCAGgGCCuGcCAGCAg -3' miRNA: 3'- -GUUgUCGuCgUCGUCgCGGuC-GUCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 59864 | 0.67 | 0.706 |
Target: 5'- gCAGCuGCcGCAGCAcCGCUGGCuGGCGa -3' miRNA: 3'- -GUUGuCGuCGUCGUcGCGGUCG-UCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 77873 | 0.67 | 0.706 |
Target: 5'- uGACGGCAucccCGGCGuGCGCCccccgcucAGCGGCGa -3' miRNA: 3'- gUUGUCGUc---GUCGU-CGCGG--------UCGUCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 133151 | 0.67 | 0.706 |
Target: 5'- gGACu-CGGCGGCGGCGCgGGCgugGGCc -3' miRNA: 3'- gUUGucGUCGUCGUCGCGgUCG---UCGu -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 139729 | 0.67 | 0.706 |
Target: 5'- nAGCAcCAGCGGCGGCGaCAGgaGGCGg -3' miRNA: 3'- gUUGUcGUCGUCGUCGCgGUCg-UCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 139604 | 0.67 | 0.706 |
Target: 5'- gAGCGGCGGCccguccgggcgcGGCugggggccauccGGCGCCGGC-GCGg -3' miRNA: 3'- gUUGUCGUCG------------UCG------------UCGCGGUCGuCGU- -5' |
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29369 | 5' | -58.1 | NC_006151.1 | + | 10709 | 0.67 | 0.685472 |
Target: 5'- ----cGC-GCAccGCGGCGCCAGCAGgAa -3' miRNA: 3'- guuguCGuCGU--CGUCGCGGUCGUCgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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