miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 106501 0.66 0.765718
Target:  5'- --cCAGCGGCuGGCGcGCGCCGuGCcgGGCGc -3'
miRNA:   3'- guuGUCGUCG-UCGU-CGCGGU-CG--UCGU- -5'
29369 5' -58.1 NC_006151.1 + 116107 0.66 0.765718
Target:  5'- --uCGGCgauGGC-GCGGCGCUugucgGGCAGCAc -3'
miRNA:   3'- guuGUCG---UCGuCGUCGCGG-----UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 133480 0.66 0.765718
Target:  5'- aGGCGGCcGCgggcgucaccuuGGCGGCGCgGGgGGCGc -3'
miRNA:   3'- gUUGUCGuCG------------UCGUCGCGgUCgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 38824 0.66 0.765718
Target:  5'- cCGACGGCGGCuuccGCcGCGucCCGGcCGGCGa -3'
miRNA:   3'- -GUUGUCGUCGu---CGuCGC--GGUC-GUCGU- -5'
29369 5' -58.1 NC_006151.1 + 59173 0.66 0.765718
Target:  5'- -cGCAGCAGC-GCGGCGaucuCGGCcuuGCGc -3'
miRNA:   3'- guUGUCGUCGuCGUCGCg---GUCGu--CGU- -5'
29369 5' -58.1 NC_006151.1 + 108675 0.66 0.756016
Target:  5'- uCAGCAGCcggAGCGGCGGC-CCG--AGCAc -3'
miRNA:   3'- -GUUGUCG---UCGUCGUCGcGGUcgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 81207 0.66 0.756016
Target:  5'- ---gGGCcGCAGUccgGGCGCCGGC-GCGu -3'
miRNA:   3'- guugUCGuCGUCG---UCGCGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 17822 0.66 0.736282
Target:  5'- ---gGGC-GCGGCGGgGCgGGCGGCc -3'
miRNA:   3'- guugUCGuCGUCGUCgCGgUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 20897 0.66 0.736282
Target:  5'- aGGC-GCAGCAGCuccacGCGCCcGCuGUAg -3'
miRNA:   3'- gUUGuCGUCGUCGu----CGCGGuCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 53670 0.66 0.736282
Target:  5'- gGGCAcgcGUAGCuGUAGCGCCcgAGCuGCGc -3'
miRNA:   3'- gUUGU---CGUCGuCGUCGCGG--UCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 54633 0.66 0.736282
Target:  5'- cCGGgGGgaAGCGGCGGCGCgAGCGcuGCGu -3'
miRNA:   3'- -GUUgUCg-UCGUCGUCGCGgUCGU--CGU- -5'
29369 5' -58.1 NC_006151.1 + 44586 0.66 0.736282
Target:  5'- -cGCuGCAGCGGCGGaCGCauCAGCGuGCc -3'
miRNA:   3'- guUGuCGUCGUCGUC-GCG--GUCGU-CGu -5'
29369 5' -58.1 NC_006151.1 + 65050 0.66 0.743236
Target:  5'- --cCGGCGGCGGCgGGCGCCcGUuaauaaaguccaucAGCAc -3'
miRNA:   3'- guuGUCGUCGUCG-UCGCGGuCG--------------UCGU- -5'
29369 5' -58.1 NC_006151.1 + 64245 0.66 0.745214
Target:  5'- gCGACGGCGGC-GCGG-GCCAcgcucucguugacGCGGCc -3'
miRNA:   3'- -GUUGUCGUCGuCGUCgCGGU-------------CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 95211 0.66 0.746201
Target:  5'- --cCAGCgAGCGGCuGCGCC-GCAcGCc -3'
miRNA:   3'- guuGUCG-UCGUCGuCGCGGuCGU-CGu -5'
29369 5' -58.1 NC_006151.1 + 66946 0.66 0.746201
Target:  5'- gCAAaGGCGGCGGCGG-GCgCGGCAcGCu -3'
miRNA:   3'- -GUUgUCGUCGUCGUCgCG-GUCGU-CGu -5'
29369 5' -58.1 NC_006151.1 + 130365 0.66 0.746201
Target:  5'- uGACGGCcGCGcgcgccGCGGCGuCCAGC-GCGa -3'
miRNA:   3'- gUUGUCGuCGU------CGUCGC-GGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 4797 0.66 0.756016
Target:  5'- gCGGC-GCGGUAGCGG-GCC-GCGGCc -3'
miRNA:   3'- -GUUGuCGUCGUCGUCgCGGuCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 64399 0.66 0.756016
Target:  5'- -cGCGGC-GCAGCAGCGuCCA-CAGg- -3'
miRNA:   3'- guUGUCGuCGUCGUCGC-GGUcGUCgu -5'
29369 5' -58.1 NC_006151.1 + 8679 0.66 0.756016
Target:  5'- cCGACGGUGGUGGCcGgGCgGGCGGUc -3'
miRNA:   3'- -GUUGUCGUCGUCGuCgCGgUCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.