miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2937 3' -59.5 NC_001493.1 + 13562 0.66 0.774802
Target:  5'- gGGCC-CCACgACC-GCGcgGCCgcaCACGGg -3'
miRNA:   3'- -CUGGuGGUG-UGGcCGCuaCGG---GUGCC- -5'
2937 3' -59.5 NC_001493.1 + 22405 0.66 0.774802
Target:  5'- aGACUuCCGgaccUACCGGCG--GCCCGCGu -3'
miRNA:   3'- -CUGGuGGU----GUGGCCGCuaCGGGUGCc -5'
2937 3' -59.5 NC_001493.1 + 49921 0.66 0.774802
Target:  5'- cACCACCGucaGCaCGGCcgaGAUGuucaacCCCACGGg -3'
miRNA:   3'- cUGGUGGUg--UG-GCCG---CUAC------GGGUGCC- -5'
2937 3' -59.5 NC_001493.1 + 79062 0.66 0.774802
Target:  5'- cACUGCCGCAUgugCGGCGuugguaaaauucGUGUCCGCGa -3'
miRNA:   3'- cUGGUGGUGUG---GCCGC------------UACGGGUGCc -5'
2937 3' -59.5 NC_001493.1 + 129117 0.66 0.774802
Target:  5'- gGGCC-CCACgACC-GCGcgGCCgcaCACGGg -3'
miRNA:   3'- -CUGGuGGUG-UGGcCGCuaCGG---GUGCC- -5'
2937 3' -59.5 NC_001493.1 + 130335 0.66 0.765614
Target:  5'- gGACCGCCGgGuuCUGGCuGAUGgguCCCAaCGGg -3'
miRNA:   3'- -CUGGUGGUgU--GGCCG-CUAC---GGGU-GCC- -5'
2937 3' -59.5 NC_001493.1 + 14781 0.66 0.765614
Target:  5'- gGACCGCCGgGuuCUGGCuGAUGgguCCCAaCGGg -3'
miRNA:   3'- -CUGGUGGUgU--GGCCG-CUAC---GGGU-GCC- -5'
2937 3' -59.5 NC_001493.1 + 22384 0.66 0.746907
Target:  5'- --aCGCCACACUGGCGGUuCCgACc- -3'
miRNA:   3'- cugGUGGUGUGGCCGCUAcGGgUGcc -5'
2937 3' -59.5 NC_001493.1 + 30937 0.66 0.746907
Target:  5'- uGCgGCCGCGgugaCGGCGcgGUCgGCGGc -3'
miRNA:   3'- cUGgUGGUGUg---GCCGCuaCGGgUGCC- -5'
2937 3' -59.5 NC_001493.1 + 5509 0.66 0.737405
Target:  5'- gGACCggugACCAgGgagaguuuCCGucaCGGUGCCCACGGg -3'
miRNA:   3'- -CUGG----UGGUgU--------GGCc--GCUACGGGUGCC- -5'
2937 3' -59.5 NC_001493.1 + 39521 0.66 0.737405
Target:  5'- -cCCACCAgACCcGCGAUggcacauacGCCCuCGGu -3'
miRNA:   3'- cuGGUGGUgUGGcCGCUA---------CGGGuGCC- -5'
2937 3' -59.5 NC_001493.1 + 23530 0.66 0.737405
Target:  5'- -cCCGCCACACCacaGGCGA-GCgCGCc- -3'
miRNA:   3'- cuGGUGGUGUGG---CCGCUaCGgGUGcc -5'
2937 3' -59.5 NC_001493.1 + 27665 0.66 0.737405
Target:  5'- aGGCCgGCCGC-CCGGCauaGCCacaaGCGGg -3'
miRNA:   3'- -CUGG-UGGUGuGGCCGcuaCGGg---UGCC- -5'
2937 3' -59.5 NC_001493.1 + 65165 0.66 0.727816
Target:  5'- cGCCAUCGC-CCGcGCGAacgGCacgCCGCGGu -3'
miRNA:   3'- cUGGUGGUGuGGC-CGCUa--CG---GGUGCC- -5'
2937 3' -59.5 NC_001493.1 + 120113 0.66 0.727816
Target:  5'- cGCUGCCGCGCCcccgGGUG-UGCCCaaacccgaacACGGa -3'
miRNA:   3'- cUGGUGGUGUGG----CCGCuACGGG----------UGCC- -5'
2937 3' -59.5 NC_001493.1 + 4559 0.66 0.727816
Target:  5'- cGCUGCCGCGCCcccgGGUG-UGCCCaaacccgaacACGGa -3'
miRNA:   3'- cUGGUGGUGUGG----CCGCuACGGG----------UGCC- -5'
2937 3' -59.5 NC_001493.1 + 106180 0.67 0.717177
Target:  5'- cGACCAgCugGCggagaaggaaCGGUgggggcaGGUGCCCAUGGa -3'
miRNA:   3'- -CUGGUgGugUG----------GCCG-------CUACGGGUGCC- -5'
2937 3' -59.5 NC_001493.1 + 14941 0.67 0.708409
Target:  5'- gGACCcaucaGCCAgAacCCGGCGGUccGCcCCAUGGg -3'
miRNA:   3'- -CUGG-----UGGUgU--GGCCGCUA--CG-GGUGCC- -5'
2937 3' -59.5 NC_001493.1 + 80109 0.67 0.708409
Target:  5'- uGACCGCCaACAugcucucuCUGGguuCGcacGUGCCCGCGGa -3'
miRNA:   3'- -CUGGUGG-UGU--------GGCC---GC---UACGGGUGCC- -5'
2937 3' -59.5 NC_001493.1 + 130495 0.67 0.708409
Target:  5'- gGACCcaucaGCCAgAacCCGGCGGUccGCcCCAUGGg -3'
miRNA:   3'- -CUGG-----UGGUgU--GGCCGCUA--CG-GGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.