miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 139470 1.11 0.000379
Target:  5'- cGCCACCUGCACACCGCGGCCCCGCUCg -3'
miRNA:   3'- -CGGUGGACGUGUGGCGCCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 37160 0.85 0.031226
Target:  5'- cGCCACCgucuccgccgGCGCccGCCGCGGCCCCGCg- -3'
miRNA:   3'- -CGGUGGa---------CGUG--UGGCGCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 11350 0.83 0.045037
Target:  5'- gGCCGCCcgcggGCGCuACCGCGcGCUCCGCUCg -3'
miRNA:   3'- -CGGUGGa----CGUG-UGGCGC-CGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 87134 0.83 0.038508
Target:  5'- aGCCACCUGCGCGCCcaGCaGCUCCGCUa -3'
miRNA:   3'- -CGGUGGACGUGUGG--CGcCGGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 38996 0.82 0.051293
Target:  5'- aUCGCC-GCGCGCCGCGgcGCCCCGCUCc -3'
miRNA:   3'- cGGUGGaCGUGUGGCGC--CGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 92195 0.81 0.0569
Target:  5'- gGCCGCCgacGCGcCGCCGCGGCCgCGCUg -3'
miRNA:   3'- -CGGUGGa--CGU-GUGGCGCCGGgGCGAg -5'
29370 3' -63.7 NC_006151.1 + 38234 0.8 0.064747
Target:  5'- gGCCGCCUGgaccUACGCCGCGGCCCUcUUCg -3'
miRNA:   3'- -CGGUGGAC----GUGUGGCGCCGGGGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 54388 0.8 0.071768
Target:  5'- gGCgCACCUGCGCGCgCGCGGCCUCGg-- -3'
miRNA:   3'- -CG-GUGGACGUGUG-GCGCCGGGGCgag -5'
29370 3' -63.7 NC_006151.1 + 123879 0.79 0.077508
Target:  5'- uGCUGCUgGCGCucGCCGCGGCCCCGC-Cg -3'
miRNA:   3'- -CGGUGGaCGUG--UGGCGCCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 107706 0.78 0.092421
Target:  5'- cGCCGCCgGCACcaaggccGCCGCGGCCCCcaaGCa- -3'
miRNA:   3'- -CGGUGGaCGUG-------UGGCGCCGGGG---CGag -5'
29370 3' -63.7 NC_006151.1 + 39975 0.78 0.099975
Target:  5'- cGCCGCCgcggGCGCcCCGcCGGCCgUGCUCu -3'
miRNA:   3'- -CGGUGGa---CGUGuGGC-GCCGGgGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 104962 0.78 0.097477
Target:  5'- aCCugCUGCGggugacgcCGCCGcCGGCCUCGCUCa -3'
miRNA:   3'- cGGugGACGU--------GUGGC-GCCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 37934 0.78 0.090332
Target:  5'- cGCCGCC-GCGCagcccgGCCGCGuGCCCCGCg- -3'
miRNA:   3'- -CGGUGGaCGUG------UGGCGC-CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 5688 0.78 0.102533
Target:  5'- cCCGCCgUGCcgGCGCUGCGGCCaCCGCUg -3'
miRNA:   3'- cGGUGG-ACG--UGUGGCGCCGG-GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 39567 0.77 0.105153
Target:  5'- cCCGCCUGCACcCCGgGGCCgagCCGCUg -3'
miRNA:   3'- cGGUGGACGUGuGGCgCCGG---GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 74867 0.77 0.107836
Target:  5'- aGgCGCC-GCGCACCGCGGCCaCCGUg- -3'
miRNA:   3'- -CgGUGGaCGUGUGGCGCCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 35853 0.77 0.110583
Target:  5'- cGCCGCCcGCucuccgcgcucgGCGCC-CGGCCUCGCUCa -3'
miRNA:   3'- -CGGUGGaCG------------UGUGGcGCCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 1680 0.76 0.122239
Target:  5'- cGCCGCCgaGCccucCGCCGCGGCCgCCGC-Cg -3'
miRNA:   3'- -CGGUGGa-CGu---GUGGCGCCGG-GGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 50431 0.76 0.122239
Target:  5'- cGCC-CCUGCGCGCCgGCGGCcugggcaccgCCCGCg- -3'
miRNA:   3'- -CGGuGGACGUGUGG-CGCCG----------GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 113540 0.76 0.122239
Target:  5'- uGgCGCUgaUGCGCGCCGCGGgCCCGCg- -3'
miRNA:   3'- -CgGUGG--ACGUGUGGCGCCgGGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.