Results 1 - 20 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29370 | 3' | -63.7 | NC_006151.1 | + | 142315 | 0.76 | 0.128486 |
Target: 5'- cGCCguauggggGCCcGCGCGCuCGCGGCgCCCGCUUu -3' miRNA: 3'- -CGG--------UGGaCGUGUG-GCGCCG-GGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 141902 | 0.68 | 0.414823 |
Target: 5'- uCCACCUccacGCGCcCCGCGGCCguuCCcCUCu -3' miRNA: 3'- cGGUGGA----CGUGuGGCGCCGG---GGcGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 141637 | 0.75 | 0.145415 |
Target: 5'- cGCUGCCgcggcgGCGCGgCGgGGCCCCGCg- -3' miRNA: 3'- -CGGUGGa-----CGUGUgGCgCCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 140174 | 0.69 | 0.374342 |
Target: 5'- gGCuCACgCUGCGCACgcuggaccccauCGUGGCCaCCGCg- -3' miRNA: 3'- -CG-GUG-GACGUGUG------------GCGCCGG-GGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 140058 | 0.68 | 0.406513 |
Target: 5'- cGCCACCgagGCgGCG-CGCGuGCUCCGCg- -3' miRNA: 3'- -CGGUGGa--CG-UGUgGCGC-CGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 139658 | 0.7 | 0.301752 |
Target: 5'- cGCgGCggGCGCGCCGCccgacaGGCCCUGCg- -3' miRNA: 3'- -CGgUGgaCGUGUGGCG------CCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 139470 | 1.11 | 0.000379 |
Target: 5'- cGCCACCUGCACACCGCGGCCCCGCUCg -3' miRNA: 3'- -CGGUGGACGUGUGGCGCCGGGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 138628 | 0.67 | 0.503217 |
Target: 5'- cGCCGCCggggGCGCGCCGgacugggaGGCCUucaaCGC-Ca -3' miRNA: 3'- -CGGUGGa---CGUGUGGCg-------CCGGG----GCGaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 138579 | 0.69 | 0.366573 |
Target: 5'- cCCGCCUGCccCACCccgucguguacGCGGCgcugCCGCUCg -3' miRNA: 3'- cGGUGGACGu-GUGG-----------CGCCGg---GGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 138324 | 0.68 | 0.414823 |
Target: 5'- aGCUGCCUGCGgGCC-CGGCacgcgcgcagCCCGC-Cg -3' miRNA: 3'- -CGGUGGACGUgUGGcGCCG----------GGGCGaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 138109 | 0.68 | 0.431751 |
Target: 5'- cGCCGCUgGCggacauGCugCGCGGCCUgGC-Cg -3' miRNA: 3'- -CGGUGGaCG------UGugGCGCCGGGgCGaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 137427 | 0.68 | 0.423236 |
Target: 5'- cGCCGCCgcgggGUccGCcuCCGCGGCCUC-CUCc -3' miRNA: 3'- -CGGUGGa----CG--UGu-GGCGCCGGGGcGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 137258 | 0.69 | 0.390211 |
Target: 5'- uUCGCCUcGCGCGCC-CGGUgCCCGCg- -3' miRNA: 3'- cGGUGGA-CGUGUGGcGCCG-GGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 136963 | 0.72 | 0.240507 |
Target: 5'- cGCCGCCUGCugGa-GCuGGCCgCCGCg- -3' miRNA: 3'- -CGGUGGACGugUggCG-CCGG-GGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 136848 | 0.69 | 0.351372 |
Target: 5'- gGCCGCCggccucGCGCGCCGCGuGaCCgCCGUc- -3' miRNA: 3'- -CGGUGGa-----CGUGUGGCGC-C-GG-GGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 136609 | 0.69 | 0.366573 |
Target: 5'- -gCACCUGgACGCCGUcaacgucacGGaCCCCGCg- -3' miRNA: 3'- cgGUGGACgUGUGGCG---------CC-GGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 136400 | 0.72 | 0.240507 |
Target: 5'- uGCUGCCUGagcggcUACGCgCGgGGCCCCGCg- -3' miRNA: 3'- -CGGUGGAC------GUGUG-GCgCCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 136349 | 0.69 | 0.390211 |
Target: 5'- aGCgGCCUGgACcCCGCGGggCUGCUCu -3' miRNA: 3'- -CGgUGGACgUGuGGCGCCggGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 136100 | 0.68 | 0.423236 |
Target: 5'- uCCAUCgcgGUcggGCGCCGCGGgcugaCCUCGCUCu -3' miRNA: 3'- cGGUGGa--CG---UGUGGCGCC-----GGGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 135991 | 0.69 | 0.377481 |
Target: 5'- gGCCACCUucgcccuccacgacgGCcuCAUCGCGGCCCUGaccauggucCUCg -3' miRNA: 3'- -CGGUGGA---------------CGu-GUGGCGCCGGGGC---------GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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