miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 142315 0.76 0.128486
Target:  5'- cGCCguauggggGCCcGCGCGCuCGCGGCgCCCGCUUu -3'
miRNA:   3'- -CGG--------UGGaCGUGUG-GCGCCG-GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 141902 0.68 0.414823
Target:  5'- uCCACCUccacGCGCcCCGCGGCCguuCCcCUCu -3'
miRNA:   3'- cGGUGGA----CGUGuGGCGCCGG---GGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 141637 0.75 0.145415
Target:  5'- cGCUGCCgcggcgGCGCGgCGgGGCCCCGCg- -3'
miRNA:   3'- -CGGUGGa-----CGUGUgGCgCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 140174 0.69 0.374342
Target:  5'- gGCuCACgCUGCGCACgcuggaccccauCGUGGCCaCCGCg- -3'
miRNA:   3'- -CG-GUG-GACGUGUG------------GCGCCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 140058 0.68 0.406513
Target:  5'- cGCCACCgagGCgGCG-CGCGuGCUCCGCg- -3'
miRNA:   3'- -CGGUGGa--CG-UGUgGCGC-CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 139658 0.7 0.301752
Target:  5'- cGCgGCggGCGCGCCGCccgacaGGCCCUGCg- -3'
miRNA:   3'- -CGgUGgaCGUGUGGCG------CCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 139470 1.11 0.000379
Target:  5'- cGCCACCUGCACACCGCGGCCCCGCUCg -3'
miRNA:   3'- -CGGUGGACGUGUGGCGCCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 138628 0.67 0.503217
Target:  5'- cGCCGCCggggGCGCGCCGgacugggaGGCCUucaaCGC-Ca -3'
miRNA:   3'- -CGGUGGa---CGUGUGGCg-------CCGGG----GCGaG- -5'
29370 3' -63.7 NC_006151.1 + 138579 0.69 0.366573
Target:  5'- cCCGCCUGCccCACCccgucguguacGCGGCgcugCCGCUCg -3'
miRNA:   3'- cGGUGGACGu-GUGG-----------CGCCGg---GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 138324 0.68 0.414823
Target:  5'- aGCUGCCUGCGgGCC-CGGCacgcgcgcagCCCGC-Cg -3'
miRNA:   3'- -CGGUGGACGUgUGGcGCCG----------GGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 138109 0.68 0.431751
Target:  5'- cGCCGCUgGCggacauGCugCGCGGCCUgGC-Cg -3'
miRNA:   3'- -CGGUGGaCG------UGugGCGCCGGGgCGaG- -5'
29370 3' -63.7 NC_006151.1 + 137427 0.68 0.423236
Target:  5'- cGCCGCCgcgggGUccGCcuCCGCGGCCUC-CUCc -3'
miRNA:   3'- -CGGUGGa----CG--UGu-GGCGCCGGGGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 137258 0.69 0.390211
Target:  5'- uUCGCCUcGCGCGCC-CGGUgCCCGCg- -3'
miRNA:   3'- cGGUGGA-CGUGUGGcGCCG-GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 136963 0.72 0.240507
Target:  5'- cGCCGCCUGCugGa-GCuGGCCgCCGCg- -3'
miRNA:   3'- -CGGUGGACGugUggCG-CCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 136848 0.69 0.351372
Target:  5'- gGCCGCCggccucGCGCGCCGCGuGaCCgCCGUc- -3'
miRNA:   3'- -CGGUGGa-----CGUGUGGCGC-C-GG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 136609 0.69 0.366573
Target:  5'- -gCACCUGgACGCCGUcaacgucacGGaCCCCGCg- -3'
miRNA:   3'- cgGUGGACgUGUGGCG---------CC-GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 136400 0.72 0.240507
Target:  5'- uGCUGCCUGagcggcUACGCgCGgGGCCCCGCg- -3'
miRNA:   3'- -CGGUGGAC------GUGUG-GCgCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 136349 0.69 0.390211
Target:  5'- aGCgGCCUGgACcCCGCGGggCUGCUCu -3'
miRNA:   3'- -CGgUGGACgUGuGGCGCCggGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 136100 0.68 0.423236
Target:  5'- uCCAUCgcgGUcggGCGCCGCGGgcugaCCUCGCUCu -3'
miRNA:   3'- cGGUGGa--CG---UGUGGCGCC-----GGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 135991 0.69 0.377481
Target:  5'- gGCCACCUucgcccuccacgacgGCcuCAUCGCGGCCCUGaccauggucCUCg -3'
miRNA:   3'- -CGGUGGA---------------CGu-GUGGCGCCGGGGC---------GAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.