miRNA display CGI


Results 101 - 120 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 72093 0.69 0.773608
Target:  5'- cUCGcGGGccuGGGCgAGCGGCAGCGucauggggaagcGCAGCu -3'
miRNA:   3'- -AGUaCCU---CCUG-UCGCCGUUGU------------CGUCG- -5'
29370 5' -55 NC_006151.1 + 44061 0.69 0.773608
Target:  5'- aCA-GGGGGACGGUGGUgcgguuUGGUAGCa -3'
miRNA:   3'- aGUaCCUCCUGUCGCCGuu----GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 30757 0.69 0.773608
Target:  5'- ---gGGcGGGGCGGgGGCAGCAcuCAGCg -3'
miRNA:   3'- aguaCC-UCCUGUCgCCGUUGUc-GUCG- -5'
29370 5' -55 NC_006151.1 + 6114 0.69 0.773608
Target:  5'- ---aGGAGGACGG-GGCGGCcucGUGGCu -3'
miRNA:   3'- aguaCCUCCUGUCgCCGUUGu--CGUCG- -5'
29370 5' -55 NC_006151.1 + 134241 0.69 0.764001
Target:  5'- aUCGUGGAcgcGGGCuuucGCGGCGAgGuGCAGg -3'
miRNA:   3'- -AGUACCU---CCUGu---CGCCGUUgU-CGUCg -5'
29370 5' -55 NC_006151.1 + 41365 0.69 0.764001
Target:  5'- gUCGUGGAGGGgagggaaaGGCGGUggGAgAGCGGg -3'
miRNA:   3'- -AGUACCUCCUg-------UCGCCG--UUgUCGUCg -5'
29370 5' -55 NC_006151.1 + 58408 0.69 0.764001
Target:  5'- cCAUGGcGcGCAGCugGGCGuGCGGCAGCc -3'
miRNA:   3'- aGUACCuCcUGUCG--CCGU-UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 113858 0.69 0.773608
Target:  5'- cUAUGuuuGAGcGACGGCGGCucCuGCGGCg -3'
miRNA:   3'- aGUAC---CUC-CUGUCGCCGuuGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 133891 0.69 0.773608
Target:  5'- cCGUGGgcugauccaccGGGACuccccuGGCGGCGcaGGCGGCg -3'
miRNA:   3'- aGUACC-----------UCCUG------UCGCCGUugUCGUCG- -5'
29370 5' -55 NC_006151.1 + 105367 0.69 0.801604
Target:  5'- cCAUGGAGGu--GCuGGCGcuGC-GCAGCg -3'
miRNA:   3'- aGUACCUCCuguCG-CCGU--UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 78656 0.69 0.801604
Target:  5'- -gGUGGAGG-CGGCcggGGCG-CGGguGCu -3'
miRNA:   3'- agUACCUCCuGUCG---CCGUuGUCguCG- -5'
29370 5' -55 NC_006151.1 + 45328 0.69 0.801604
Target:  5'- ---gGGAGGGUGGCGGUggagGACGGgAGCg -3'
miRNA:   3'- aguaCCUCCUGUCGCCG----UUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 29438 0.69 0.801604
Target:  5'- ---cGGGGGGCGGCGGgGAgAGgGGa -3'
miRNA:   3'- aguaCCUCCUGUCGCCgUUgUCgUCg -5'
29370 5' -55 NC_006151.1 + 18148 0.69 0.801604
Target:  5'- cCAUGucGG-CGGgGGCGGCGGCGGg -3'
miRNA:   3'- aGUACcuCCuGUCgCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 130357 0.69 0.79242
Target:  5'- gUCGUGGuuGACGGCcGCGcgcGCcGCGGCg -3'
miRNA:   3'- -AGUACCucCUGUCGcCGU---UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 112595 0.69 0.79242
Target:  5'- uUCGUGGAGGccGCcGCGGC-GCcGCuGGCg -3'
miRNA:   3'- -AGUACCUCC--UGuCGCCGuUGuCG-UCG- -5'
29370 5' -55 NC_006151.1 + 20478 0.69 0.79242
Target:  5'- cCcgGGGGGGC-GCGGgGGucguCGGCGGCu -3'
miRNA:   3'- aGuaCCUCCUGuCGCCgUU----GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 33389 0.69 0.783084
Target:  5'- gUCGggcGGAGGACAGaGGCGGagagGGCgAGCg -3'
miRNA:   3'- -AGUa--CCUCCUGUCgCCGUUg---UCG-UCG- -5'
29370 5' -55 NC_006151.1 + 5345 0.69 0.783084
Target:  5'- ---cGGAGGGCGcccucuccggcGCGGCGcCGGCGGg -3'
miRNA:   3'- aguaCCUCCUGU-----------CGCCGUuGUCGUCg -5'
29370 5' -55 NC_006151.1 + 81523 0.7 0.74443
Target:  5'- gCGU-GAGcuCGGCGGCcGCGGCGGCg -3'
miRNA:   3'- aGUAcCUCcuGUCGCCGuUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.