Results 61 - 80 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29370 | 5' | -55 | NC_006151.1 | + | 112048 | 0.72 | 0.621116 |
Target: 5'- ---cGGcGGGCgGGCGGCGGCGGUGGUg -3' miRNA: 3'- aguaCCuCCUG-UCGCCGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 104006 | 0.71 | 0.673223 |
Target: 5'- cCGUGGAGGcGCGccgcGCGGCGgagguggagcGCGcGCAGCg -3' miRNA: 3'- aGUACCUCC-UGU----CGCCGU----------UGU-CGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 134819 | 0.71 | 0.693885 |
Target: 5'- ---cGGAcccGGACGGUGGCGACcGCGcGCg -3' miRNA: 3'- aguaCCU---CCUGUCGCCGUUGuCGU-CG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 54632 | 0.71 | 0.652422 |
Target: 5'- cCcgGGGGGA-AGCGGCGGC-GCgAGCg -3' miRNA: 3'- aGuaCCUCCUgUCGCCGUUGuCG-UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 89265 | 0.71 | 0.673223 |
Target: 5'- gUCGUGGucGACGgcgccGCGGCGAUGGCcGCc -3' miRNA: 3'- -AGUACCucCUGU-----CGCCGUUGUCGuCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 74491 | 0.71 | 0.673223 |
Target: 5'- -gAUGGGGucgcagucccaGAUgAGCGGgGGCAGCAGCg -3' miRNA: 3'- agUACCUC-----------CUG-UCGCCgUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 128258 | 0.71 | 0.662836 |
Target: 5'- -gGUGGuGGA-AGCGGCAcugcGCGcGCAGCg -3' miRNA: 3'- agUACCuCCUgUCGCCGU----UGU-CGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 133370 | 0.71 | 0.652422 |
Target: 5'- -gGUGGuGGugGugGCGGCcggGGCGGCGGCc -3' miRNA: 3'- agUACCuCCugU--CGCCG---UUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 20132 | 0.71 | 0.652422 |
Target: 5'- --cUGGGGGGCgGGCGccGCGGgGGCGGCg -3' miRNA: 3'- aguACCUCCUG-UCGC--CGUUgUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 128386 | 0.71 | 0.662836 |
Target: 5'- gUCAc-GAGGuccACGGCGGCcacGACGGCGGCc -3' miRNA: 3'- -AGUacCUCC---UGUCGCCG---UUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 61260 | 0.71 | 0.652422 |
Target: 5'- ----cGAGGAC-GCGGCGGCAgGCGGUa -3' miRNA: 3'- aguacCUCCUGuCGCCGUUGU-CGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 96046 | 0.71 | 0.662836 |
Target: 5'- ---aGGGGGuuCAGCaGGUAGCAGCuGGCg -3' miRNA: 3'- aguaCCUCCu-GUCG-CCGUUGUCG-UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 69966 | 0.7 | 0.703117 |
Target: 5'- cCcgGGgccgcgcGGGcgcuGCAGCGGCGGCAGCgucAGCa -3' miRNA: 3'- aGuaCC-------UCC----UGUCGCCGUUGUCG---UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 137905 | 0.7 | 0.70414 |
Target: 5'- cCAaGGucGACGGCGGCGGCuGCcacgGGCg -3' miRNA: 3'- aGUaCCucCUGUCGCCGUUGuCG----UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 64441 | 0.7 | 0.731485 |
Target: 5'- gCGUGGccgccuccaccgucAGGAUGGCGGCGcgcgccgccGCGGCGGg -3' miRNA: 3'- aGUACC--------------UCCUGUCGCCGU---------UGUCGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 84409 | 0.7 | 0.72445 |
Target: 5'- ---gGGuGGGCgcggugauaaGGCGGCGcGCGGCGGCg -3' miRNA: 3'- aguaCCuCCUG----------UCGCCGU-UGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 59853 | 0.7 | 0.72445 |
Target: 5'- gUCcgGGGGGcGCAGCuGCcGCAGCAccGCu -3' miRNA: 3'- -AGuaCCUCC-UGUCGcCGuUGUCGU--CG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 2578 | 0.7 | 0.701069 |
Target: 5'- -gGUGGGGaGCacgcgcuggcgguaGGCGcGCGGCGGCAGCg -3' miRNA: 3'- agUACCUCcUG--------------UCGC-CGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 118880 | 0.7 | 0.70414 |
Target: 5'- ---cGGcGGcGCGGCGGCGAC-GCGGCc -3' miRNA: 3'- aguaCCuCC-UGUCGCCGUUGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 30335 | 0.7 | 0.70414 |
Target: 5'- ---aGGAGG-CGGCGGCGGC-GCgagGGCg -3' miRNA: 3'- aguaCCUCCuGUCGCCGUUGuCG---UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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