miRNA display CGI


Results 81 - 100 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 36919 0.7 0.738475
Target:  5'- ---cGGAGaGGCGcccuccgccgcggccGCGGCuuCAGCAGCu -3'
miRNA:   3'- aguaCCUC-CUGU---------------CGCCGuuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 64441 0.7 0.731485
Target:  5'- gCGUGGccgccuccaccgucAGGAUGGCGGCGcgcgccgccGCGGCGGg -3'
miRNA:   3'- aGUACC--------------UCCUGUCGCCGU---------UGUCGUCg -5'
29370 5' -55 NC_006151.1 + 2578 0.7 0.701069
Target:  5'- -gGUGGGGaGCacgcgcuggcgguaGGCGcGCGGCGGCAGCg -3'
miRNA:   3'- agUACCUCcUG--------------UCGC-CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 30335 0.7 0.70414
Target:  5'- ---aGGAGG-CGGCGGCGGC-GCgagGGCg -3'
miRNA:   3'- aguaCCUCCuGUCGCCGUUGuCG---UCG- -5'
29370 5' -55 NC_006151.1 + 118880 0.7 0.70414
Target:  5'- ---cGGcGGcGCGGCGGCGAC-GCGGCc -3'
miRNA:   3'- aguaCCuCC-UGUCGCCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 10198 0.7 0.70414
Target:  5'- gUCGcGGcgcGGGCGGCGGCuGCAgagGCGGCu -3'
miRNA:   3'- -AGUaCCu--CCUGUCGCCGuUGU---CGUCG- -5'
29370 5' -55 NC_006151.1 + 122960 0.7 0.714331
Target:  5'- ---cGGGGGGCGcggacGcCGGCGACGGgGGCg -3'
miRNA:   3'- aguaCCUCCUGU-----C-GCCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 84409 0.7 0.72445
Target:  5'- ---gGGuGGGCgcggugauaaGGCGGCGcGCGGCGGCg -3'
miRNA:   3'- aguaCCuCCUG----------UCGCCGU-UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 44061 0.69 0.773608
Target:  5'- aCA-GGGGGACGGUGGUgcgguuUGGUAGCa -3'
miRNA:   3'- aGUaCCUCCUGUCGCCGuu----GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 45328 0.69 0.801604
Target:  5'- ---gGGAGGGUGGCGGUggagGACGGgAGCg -3'
miRNA:   3'- aguaCCUCCUGUCGCCG----UUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 78656 0.69 0.801604
Target:  5'- -gGUGGAGG-CGGCcggGGCG-CGGguGCu -3'
miRNA:   3'- agUACCUCCuGUCG---CCGUuGUCguCG- -5'
29370 5' -55 NC_006151.1 + 105367 0.69 0.801604
Target:  5'- cCAUGGAGGu--GCuGGCGcuGC-GCAGCg -3'
miRNA:   3'- aGUACCUCCuguCG-CCGU--UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 130357 0.69 0.79242
Target:  5'- gUCGUGGuuGACGGCcGCGcgcGCcGCGGCg -3'
miRNA:   3'- -AGUACCucCUGUCGcCGU---UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 6114 0.69 0.773608
Target:  5'- ---aGGAGGACGG-GGCGGCcucGUGGCu -3'
miRNA:   3'- aguaCCUCCUGUCgCCGUUGu--CGUCG- -5'
29370 5' -55 NC_006151.1 + 3079 0.69 0.773608
Target:  5'- ---cGGuGGGCGaaGGCGGCgAGCAGCg -3'
miRNA:   3'- aguaCCuCCUGUcgCCGUUG-UCGUCG- -5'
29370 5' -55 NC_006151.1 + 71973 0.69 0.773608
Target:  5'- gUCGcGGuGcGGCGGgGGCAGCuGGUAGCg -3'
miRNA:   3'- -AGUaCCuC-CUGUCgCCGUUG-UCGUCG- -5'
29370 5' -55 NC_006151.1 + 134241 0.69 0.764001
Target:  5'- aUCGUGGAcgcGGGCuuucGCGGCGAgGuGCAGg -3'
miRNA:   3'- -AGUACCU---CCUGu---CGCCGUUgU-CGUCg -5'
29370 5' -55 NC_006151.1 + 58408 0.69 0.764001
Target:  5'- cCAUGGcGcGCAGCugGGCGuGCGGCAGCc -3'
miRNA:   3'- aGUACCuCcUGUCG--CCGU-UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 41365 0.69 0.764001
Target:  5'- gUCGUGGAGGGgagggaaaGGCGGUggGAgAGCGGg -3'
miRNA:   3'- -AGUACCUCCUg-------UCGCCG--UUgUCGUCg -5'
29370 5' -55 NC_006151.1 + 30757 0.69 0.773608
Target:  5'- ---gGGcGGGGCGGgGGCAGCAcuCAGCg -3'
miRNA:   3'- aguaCC-UCCUGUCgCCGUUGUc-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.