Results 101 - 120 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29370 | 5' | -55 | NC_006151.1 | + | 41365 | 0.69 | 0.764001 |
Target: 5'- gUCGUGGAGGGgagggaaaGGCGGUggGAgAGCGGg -3' miRNA: 3'- -AGUACCUCCUg-------UCGCCG--UUgUCGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 58408 | 0.69 | 0.764001 |
Target: 5'- cCAUGGcGcGCAGCugGGCGuGCGGCAGCc -3' miRNA: 3'- aGUACCuCcUGUCG--CCGU-UGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 20478 | 0.69 | 0.79242 |
Target: 5'- cCcgGGGGGGC-GCGGgGGucguCGGCGGCu -3' miRNA: 3'- aGuaCCUCCUGuCGCCgUU----GUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 112595 | 0.69 | 0.79242 |
Target: 5'- uUCGUGGAGGccGCcGCGGC-GCcGCuGGCg -3' miRNA: 3'- -AGUACCUCC--UGuCGCCGuUGuCG-UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 130357 | 0.69 | 0.79242 |
Target: 5'- gUCGUGGuuGACGGCcGCGcgcGCcGCGGCg -3' miRNA: 3'- -AGUACCucCUGUCGcCGU---UGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 105367 | 0.69 | 0.801604 |
Target: 5'- cCAUGGAGGu--GCuGGCGcuGC-GCAGCg -3' miRNA: 3'- aGUACCUCCuguCG-CCGU--UGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 78656 | 0.69 | 0.801604 |
Target: 5'- -gGUGGAGG-CGGCcggGGCG-CGGguGCu -3' miRNA: 3'- agUACCUCCuGUCG---CCGUuGUCguCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 45328 | 0.69 | 0.801604 |
Target: 5'- ---gGGAGGGUGGCGGUggagGACGGgAGCg -3' miRNA: 3'- aguaCCUCCUGUCGCCG----UUGUCgUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 29438 | 0.69 | 0.801604 |
Target: 5'- ---cGGGGGGCGGCGGgGAgAGgGGa -3' miRNA: 3'- aguaCCUCCUGUCGCCgUUgUCgUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 18148 | 0.69 | 0.801604 |
Target: 5'- cCAUGucGG-CGGgGGCGGCGGCGGg -3' miRNA: 3'- aGUACcuCCuGUCgCCGUUGUCGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 10093 | 0.68 | 0.828165 |
Target: 5'- ---cGGAGGAaGGCGGguGCGGaggaggaAGCg -3' miRNA: 3'- aguaCCUCCUgUCGCCguUGUCg------UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 90754 | 0.68 | 0.819486 |
Target: 5'- ---cGG-GGGCGGCGGgcACGGUGGCg -3' miRNA: 3'- aguaCCuCCUGUCGCCguUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 4907 | 0.68 | 0.819486 |
Target: 5'- gCcgGGccAGGGCuccccgAGCGGgGugAGCAGCg -3' miRNA: 3'- aGuaCC--UCCUG------UCGCCgUugUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 141373 | 0.68 | 0.819486 |
Target: 5'- ---aGuAGGACGGgGGCGggccccgggcaaACAGCGGCg -3' miRNA: 3'- aguaCcUCCUGUCgCCGU------------UGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 76069 | 0.68 | 0.810629 |
Target: 5'- gCGUGaAGGGCgccAGCaGCGACAGgGGCg -3' miRNA: 3'- aGUACcUCCUG---UCGcCGUUGUCgUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 4326 | 0.68 | 0.810629 |
Target: 5'- ---cGGccGGGcugcGCGGCGGCGAaGGCGGCg -3' miRNA: 3'- aguaCC--UCC----UGUCGCCGUUgUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 59728 | 0.68 | 0.810629 |
Target: 5'- gUCAcGG-GGuuGGCGaGCGcgcGCAGCAGCu -3' miRNA: 3'- -AGUaCCuCCugUCGC-CGU---UGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 58653 | 0.68 | 0.810629 |
Target: 5'- gCcgGGAGGGC-GCGGCGcAgGGCcGCc -3' miRNA: 3'- aGuaCCUCCUGuCGCCGU-UgUCGuCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 60738 | 0.68 | 0.809734 |
Target: 5'- ---cGGAGcacgaGGCAGCGGCGGCucgcgaaGGCGGUc -3' miRNA: 3'- aguaCCUC-----CUGUCGCCGUUG-------UCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 76690 | 0.68 | 0.809734 |
Target: 5'- gCAgGGGGGAgAGUGGCGcgggcgcGCcGCGGCc -3' miRNA: 3'- aGUaCCUCCUgUCGCCGU-------UGuCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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