miRNA display CGI


Results 101 - 120 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 5345 0.69 0.783084
Target:  5'- ---cGGAGGGCGcccucuccggcGCGGCGcCGGCGGg -3'
miRNA:   3'- aguaCCUCCUGU-----------CGCCGUuGUCGUCg -5'
29370 5' -55 NC_006151.1 + 33389 0.69 0.783084
Target:  5'- gUCGggcGGAGGACAGaGGCGGagagGGCgAGCg -3'
miRNA:   3'- -AGUa--CCUCCUGUCgCCGUUg---UCG-UCG- -5'
29370 5' -55 NC_006151.1 + 20478 0.69 0.79242
Target:  5'- cCcgGGGGGGC-GCGGgGGucguCGGCGGCu -3'
miRNA:   3'- aGuaCCUCCUGuCGCCgUU----GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 112595 0.69 0.79242
Target:  5'- uUCGUGGAGGccGCcGCGGC-GCcGCuGGCg -3'
miRNA:   3'- -AGUACCUCC--UGuCGCCGuUGuCG-UCG- -5'
29370 5' -55 NC_006151.1 + 130357 0.69 0.79242
Target:  5'- gUCGUGGuuGACGGCcGCGcgcGCcGCGGCg -3'
miRNA:   3'- -AGUACCucCUGUCGcCGU---UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 18148 0.69 0.801604
Target:  5'- cCAUGucGG-CGGgGGCGGCGGCGGg -3'
miRNA:   3'- aGUACcuCCuGUCgCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 29438 0.69 0.801604
Target:  5'- ---cGGGGGGCGGCGGgGAgAGgGGa -3'
miRNA:   3'- aguaCCUCCUGUCGCCgUUgUCgUCg -5'
29370 5' -55 NC_006151.1 + 78656 0.69 0.801604
Target:  5'- -gGUGGAGG-CGGCcggGGCG-CGGguGCu -3'
miRNA:   3'- agUACCUCCuGUCG---CCGUuGUCguCG- -5'
29370 5' -55 NC_006151.1 + 105367 0.69 0.801604
Target:  5'- cCAUGGAGGu--GCuGGCGcuGC-GCAGCg -3'
miRNA:   3'- aGUACCUCCuguCG-CCGU--UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 45328 0.69 0.801604
Target:  5'- ---gGGAGGGUGGCGGUggagGACGGgAGCg -3'
miRNA:   3'- aguaCCUCCUGUCGCCG----UUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 60738 0.68 0.809734
Target:  5'- ---cGGAGcacgaGGCAGCGGCGGCucgcgaaGGCGGUc -3'
miRNA:   3'- aguaCCUC-----CUGUCGCCGUUG-------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 76690 0.68 0.809734
Target:  5'- gCAgGGGGGAgAGUGGCGcgggcgcGCcGCGGCc -3'
miRNA:   3'- aGUaCCUCCUgUCGCCGU-------UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 58653 0.68 0.810629
Target:  5'- gCcgGGAGGGC-GCGGCGcAgGGCcGCc -3'
miRNA:   3'- aGuaCCUCCUGuCGCCGU-UgUCGuCG- -5'
29370 5' -55 NC_006151.1 + 59728 0.68 0.810629
Target:  5'- gUCAcGG-GGuuGGCGaGCGcgcGCAGCAGCu -3'
miRNA:   3'- -AGUaCCuCCugUCGC-CGU---UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 76069 0.68 0.810629
Target:  5'- gCGUGaAGGGCgccAGCaGCGACAGgGGCg -3'
miRNA:   3'- aGUACcUCCUG---UCGcCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 4326 0.68 0.810629
Target:  5'- ---cGGccGGGcugcGCGGCGGCGAaGGCGGCg -3'
miRNA:   3'- aguaCC--UCC----UGUCGCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 90332 0.68 0.816847
Target:  5'- gCAUGGgcAGGcGCAGCauggccaugaggcuGGCGACgccgAGCAGCa -3'
miRNA:   3'- aGUACC--UCC-UGUCG--------------CCGUUG----UCGUCG- -5'
29370 5' -55 NC_006151.1 + 4907 0.68 0.819486
Target:  5'- gCcgGGccAGGGCuccccgAGCGGgGugAGCAGCg -3'
miRNA:   3'- aGuaCC--UCCUG------UCGCCgUugUCGUCG- -5'
29370 5' -55 NC_006151.1 + 90754 0.68 0.819486
Target:  5'- ---cGG-GGGCGGCGGgcACGGUGGCg -3'
miRNA:   3'- aguaCCuCCUGUCGCCguUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 141373 0.68 0.819486
Target:  5'- ---aGuAGGACGGgGGCGggccccgggcaaACAGCGGCg -3'
miRNA:   3'- aguaCcUCCUGUCgCCGU------------UGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.