Results 121 - 140 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29370 | 5' | -55 | NC_006151.1 | + | 10093 | 0.68 | 0.828165 |
Target: 5'- ---cGGAGGAaGGCGGguGCGGaggaggaAGCg -3' miRNA: 3'- aguaCCUCCUgUCGCCguUGUCg------UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 103928 | 0.68 | 0.828165 |
Target: 5'- cCGUGGAGGA--GCcGCAGCuGCAGa -3' miRNA: 3'- aGUACCUCCUguCGcCGUUGuCGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 85643 | 0.68 | 0.831586 |
Target: 5'- cCAgcGGGGacgcgcccgccucgcGCAGCGGCGACGGCAaccuGCg -3' miRNA: 3'- aGUacCUCC---------------UGUCGCCGUUGUCGU----CG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 24801 | 0.68 | 0.836659 |
Target: 5'- aUCGU--GGGACAG-GcGCuGCAGCAGCa -3' miRNA: 3'- -AGUAccUCCUGUCgC-CGuUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 23726 | 0.68 | 0.836659 |
Target: 5'- cUCGcGGuGGACgAGgGGCAccuuGCAGUGGCc -3' miRNA: 3'- -AGUaCCuCCUG-UCgCCGU----UGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 1001 | 0.68 | 0.836659 |
Target: 5'- -aGUGGGcGAUGGuuGCAACGGCAGUu -3' miRNA: 3'- agUACCUcCUGUCgcCGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 70964 | 0.68 | 0.836659 |
Target: 5'- gCGUGGccGuCgAG-GGCAACAGCAGCc -3' miRNA: 3'- aGUACCucCuG-UCgCCGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 50566 | 0.68 | 0.836659 |
Target: 5'- cUCAgcauccGCAGCaGCAGCAGCAGCa -3' miRNA: 3'- -AGUaccuccUGUCGcCGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 56042 | 0.68 | 0.842491 |
Target: 5'- gCGUcGAGGGCGGCGcGCugacgcugcgccucGAgAGCGGCg -3' miRNA: 3'- aGUAcCUCCUGUCGC-CG--------------UUgUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 88068 | 0.68 | 0.84496 |
Target: 5'- --cUGcGAGGGCAGgcccucgaGGCGGCAGguGUa -3' miRNA: 3'- aguAC-CUCCUGUCg-------CCGUUGUCguCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 4549 | 0.68 | 0.84496 |
Target: 5'- cCAUGGcguccccGAUGuGCGGCAGCGGCGGg -3' miRNA: 3'- aGUACCuc-----CUGU-CGCCGUUGUCGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 51039 | 0.68 | 0.84496 |
Target: 5'- -gAUGGGGaugguGACGGUGGUggcgauggugauGGCGGCGGCc -3' miRNA: 3'- agUACCUC-----CUGUCGCCG------------UUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 118128 | 0.68 | 0.853059 |
Target: 5'- cUCGUGGcGcGCAGCGccgacgacgccGCGGCGGUGGCg -3' miRNA: 3'- -AGUACCuCcUGUCGC-----------CGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 141620 | 0.68 | 0.853059 |
Target: 5'- gCcgGGAucGGGCGggucgcugccGCGGCGGC-GCGGCg -3' miRNA: 3'- aGuaCCU--CCUGU----------CGCCGUUGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 81596 | 0.68 | 0.853059 |
Target: 5'- gUCGccGGGGccgcCGGCGcGCAGCAGCAGg -3' miRNA: 3'- -AGUacCUCCu---GUCGC-CGUUGUCGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 59398 | 0.68 | 0.853059 |
Target: 5'- aCGUGGcaccGCAGCaccucgaGCAGCAGCGGCg -3' miRNA: 3'- aGUACCucc-UGUCGc------CGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 23939 | 0.68 | 0.853059 |
Target: 5'- gUCGUGGAcGGGguGCcGUAGCAG-AGCu -3' miRNA: 3'- -AGUACCU-CCUguCGcCGUUGUCgUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 102498 | 0.68 | 0.853059 |
Target: 5'- uUCAUGGAcgccgcggcgcgGGACcccGGCGGCGucuacgaccagACGGUGGUg -3' miRNA: 3'- -AGUACCU------------CCUG---UCGCCGU-----------UGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 75126 | 0.68 | 0.853059 |
Target: 5'- --cUGGucGGCGGcCGGCGGC-GCGGCc -3' miRNA: 3'- aguACCucCUGUC-GCCGUUGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 133137 | 0.68 | 0.853059 |
Target: 5'- uUCAUGucccaGAGGGacuCGGCGGCGGC-GCGGg -3' miRNA: 3'- -AGUAC-----CUCCU---GUCGCCGUUGuCGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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