miRNA display CGI


Results 141 - 160 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 9991 0.68 0.856241
Target:  5'- ---aGGaAGGAaaaaaaaccucgagAGCGGCGGCGGCGGUc -3'
miRNA:   3'- aguaCC-UCCUg-------------UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 90668 0.68 0.856241
Target:  5'- ---cGGGGcGGCGggccgcuugucccccGCGGCGGgGGCGGCg -3'
miRNA:   3'- aguaCCUC-CUGU---------------CGCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 4254 0.67 0.860951
Target:  5'- ---gGGcAGGGCAGCaGGCGcucgaggacgccGCGGCAGg -3'
miRNA:   3'- aguaCC-UCCUGUCG-CCGU------------UGUCGUCg -5'
29370 5' -55 NC_006151.1 + 93432 0.67 0.860951
Target:  5'- ---aGGAGGAgGGgGGCgAGCGGgGGUc -3'
miRNA:   3'- aguaCCUCCUgUCgCCG-UUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 42999 0.67 0.860951
Target:  5'- ---cGGGGGAgGGCGGCG--GGCgcuuGGCa -3'
miRNA:   3'- aguaCCUCCUgUCGCCGUugUCG----UCG- -5'
29370 5' -55 NC_006151.1 + 65821 0.67 0.860951
Target:  5'- -gGUGGAuGGGCGGCcGCGcCAGC-GCg -3'
miRNA:   3'- agUACCU-CCUGUCGcCGUuGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 76738 0.67 0.860951
Target:  5'- -gAUGGAGcGCGcguacgcgcGCGGCAGCAGgaaGGCg -3'
miRNA:   3'- agUACCUCcUGU---------CGCCGUUGUCg--UCG- -5'
29370 5' -55 NC_006151.1 + 122922 0.67 0.868627
Target:  5'- ----cGAGGGCGGCGacgacgcggacGcCGACGGCGGCg -3'
miRNA:   3'- aguacCUCCUGUCGC-----------C-GUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 109907 0.67 0.868627
Target:  5'- --------cGCGGCGGCAGCAGCAGa -3'
miRNA:   3'- aguaccuccUGUCGCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 91541 0.67 0.868627
Target:  5'- gCGUGcgcGAGGugcGCGGCcagcggGGCGAUGGCGGCg -3'
miRNA:   3'- aGUAC---CUCC---UGUCG------CCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 18488 0.67 0.868627
Target:  5'- cUCGUGcGuGGGCAGgcugguguacacCGGCGAgAGCAuGCg -3'
miRNA:   3'- -AGUAC-CuCCUGUC------------GCCGUUgUCGU-CG- -5'
29370 5' -55 NC_006151.1 + 108767 0.67 0.875347
Target:  5'- cCGUGGAgaucaaccucgGGACAucuccccGCGGCccCAGUGGCg -3'
miRNA:   3'- aGUACCU-----------CCUGU-------CGCCGuuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 89126 0.67 0.876083
Target:  5'- ----cGAGGGCGGCGGgAcCGGgGGCg -3'
miRNA:   3'- aguacCUCCUGUCGCCgUuGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 73779 0.67 0.876083
Target:  5'- aCGUGcuGGGCGGCGGCGcgcACcuCGGCg -3'
miRNA:   3'- aGUACcuCCUGUCGCCGU---UGucGUCG- -5'
29370 5' -55 NC_006151.1 + 104848 0.67 0.876083
Target:  5'- ---cGGAGGcggaccagGCcGCGGCGACGG-AGCg -3'
miRNA:   3'- aguaCCUCC--------UGuCGCCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 44492 0.67 0.876083
Target:  5'- -gGUGGGGGAUGGUguggGGUGGCGGUGGg -3'
miRNA:   3'- agUACCUCCUGUCG----CCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 18075 0.67 0.876083
Target:  5'- --uUGGGGGcCAGCaGGaCGuCGGCGGCc -3'
miRNA:   3'- aguACCUCCuGUCG-CC-GUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 67457 0.67 0.876083
Target:  5'- gCggGGGGGucGCAgagcGCGcGCAGCAGCGGg -3'
miRNA:   3'- aGuaCCUCC--UGU----CGC-CGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 129313 0.67 0.883311
Target:  5'- gCAUGGcGGaGGCAGaGGCGGguUAGCGGCc -3'
miRNA:   3'- aGUACC-UC-CUGUCgCCGUU--GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 20824 0.67 0.883311
Target:  5'- cUCGUGGugcacgcgGGGGCAGaGGUcguacuCGGCGGCg -3'
miRNA:   3'- -AGUACC--------UCCUGUCgCCGuu----GUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.