Results 101 - 120 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29370 | 5' | -55 | NC_006151.1 | + | 78656 | 0.69 | 0.801604 |
Target: 5'- -gGUGGAGG-CGGCcggGGCG-CGGguGCu -3' miRNA: 3'- agUACCUCCuGUCG---CCGUuGUCguCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 105367 | 0.69 | 0.801604 |
Target: 5'- cCAUGGAGGu--GCuGGCGcuGC-GCAGCg -3' miRNA: 3'- aGUACCUCCuguCG-CCGU--UGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 20478 | 0.69 | 0.79242 |
Target: 5'- cCcgGGGGGGC-GCGGgGGucguCGGCGGCu -3' miRNA: 3'- aGuaCCUCCUGuCGCCgUU----GUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 112595 | 0.69 | 0.79242 |
Target: 5'- uUCGUGGAGGccGCcGCGGC-GCcGCuGGCg -3' miRNA: 3'- -AGUACCUCC--UGuCGCCGuUGuCG-UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 130357 | 0.69 | 0.79242 |
Target: 5'- gUCGUGGuuGACGGCcGCGcgcGCcGCGGCg -3' miRNA: 3'- -AGUACCucCUGUCGcCGU---UGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 33389 | 0.69 | 0.783084 |
Target: 5'- gUCGggcGGAGGACAGaGGCGGagagGGCgAGCg -3' miRNA: 3'- -AGUa--CCUCCUGUCgCCGUUg---UCG-UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 5345 | 0.69 | 0.783084 |
Target: 5'- ---cGGAGGGCGcccucuccggcGCGGCGcCGGCGGg -3' miRNA: 3'- aguaCCUCCUGU-----------CGCCGUuGUCGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 6114 | 0.69 | 0.773608 |
Target: 5'- ---aGGAGGACGG-GGCGGCcucGUGGCu -3' miRNA: 3'- aguaCCUCCUGUCgCCGUUGu--CGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 30757 | 0.69 | 0.773608 |
Target: 5'- ---gGGcGGGGCGGgGGCAGCAcuCAGCg -3' miRNA: 3'- aguaCC-UCCUGUCgCCGUUGUc-GUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 44061 | 0.69 | 0.773608 |
Target: 5'- aCA-GGGGGACGGUGGUgcgguuUGGUAGCa -3' miRNA: 3'- aGUaCCUCCUGUCGCCGuu----GUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 72093 | 0.69 | 0.773608 |
Target: 5'- cUCGcGGGccuGGGCgAGCGGCAGCGucauggggaagcGCAGCu -3' miRNA: 3'- -AGUaCCU---CCUG-UCGCCGUUGU------------CGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 3079 | 0.69 | 0.773608 |
Target: 5'- ---cGGuGGGCGaaGGCGGCgAGCAGCg -3' miRNA: 3'- aguaCCuCCUGUcgCCGUUG-UCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 71973 | 0.69 | 0.773608 |
Target: 5'- gUCGcGGuGcGGCGGgGGCAGCuGGUAGCg -3' miRNA: 3'- -AGUaCCuC-CUGUCgCCGUUG-UCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 95429 | 0.69 | 0.773608 |
Target: 5'- ---aGGuuGGAC-GUGGCGAgGGCGGCg -3' miRNA: 3'- aguaCCu-CCUGuCGCCGUUgUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 113858 | 0.69 | 0.773608 |
Target: 5'- cUAUGuuuGAGcGACGGCGGCucCuGCGGCg -3' miRNA: 3'- aGUAC---CUC-CUGUCGCCGuuGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 133891 | 0.69 | 0.773608 |
Target: 5'- cCGUGGgcugauccaccGGGACuccccuGGCGGCGcaGGCGGCg -3' miRNA: 3'- aGUACC-----------UCCUG------UCGCCGUugUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 134241 | 0.69 | 0.764001 |
Target: 5'- aUCGUGGAcgcGGGCuuucGCGGCGAgGuGCAGg -3' miRNA: 3'- -AGUACCU---CCUGu---CGCCGUUgU-CGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 41365 | 0.69 | 0.764001 |
Target: 5'- gUCGUGGAGGGgagggaaaGGCGGUggGAgAGCGGg -3' miRNA: 3'- -AGUACCUCCUg-------UCGCCG--UUgUCGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 58408 | 0.69 | 0.764001 |
Target: 5'- cCAUGGcGcGCAGCugGGCGuGCGGCAGCc -3' miRNA: 3'- aGUACCuCcUGUCG--CCGU-UGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 130921 | 0.7 | 0.754271 |
Target: 5'- -gGUGGccGGGcccGCGGgGGCGGgGGCGGCg -3' miRNA: 3'- agUACC--UCC---UGUCgCCGUUgUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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