miRNA display CGI


Results 101 - 120 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 75126 0.68 0.853059
Target:  5'- --cUGGucGGCGGcCGGCGGC-GCGGCc -3'
miRNA:   3'- aguACCucCUGUC-GCCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 76069 0.68 0.810629
Target:  5'- gCGUGaAGGGCgccAGCaGCGACAGgGGCg -3'
miRNA:   3'- aGUACcUCCUG---UCGcCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 76690 0.68 0.809734
Target:  5'- gCAgGGGGGAgAGUGGCGcgggcgcGCcGCGGCc -3'
miRNA:   3'- aGUaCCUCCUgUCGCCGU-------UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 76738 0.67 0.860951
Target:  5'- -gAUGGAGcGCGcguacgcgcGCGGCAGCAGgaaGGCg -3'
miRNA:   3'- agUACCUCcUGU---------CGCCGUUGUCg--UCG- -5'
29370 5' -55 NC_006151.1 + 77023 0.66 0.921684
Target:  5'- cCGUGGAGcGcCAGgacgaGGCAGCAcGCGGg -3'
miRNA:   3'- aGUACCUC-CuGUCg----CCGUUGU-CGUCg -5'
29370 5' -55 NC_006151.1 + 78386 0.76 0.388086
Target:  5'- ---gGGAGGAgggGGCGGCcACGGCGGCu -3'
miRNA:   3'- aguaCCUCCUg--UCGCCGuUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 78568 0.75 0.450691
Target:  5'- cCcgGGAGGAC-GCGGCGACgggccuggagcuGGCGGUc -3'
miRNA:   3'- aGuaCCUCCUGuCGCCGUUG------------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 78656 0.69 0.801604
Target:  5'- -gGUGGAGG-CGGCcggGGCG-CGGguGCu -3'
miRNA:   3'- agUACCUCCuGUCG---CCGUuGUCguCG- -5'
29370 5' -55 NC_006151.1 + 80334 0.75 0.450691
Target:  5'- ---gGGGGGACcGgGGCGAgGGCGGCu -3'
miRNA:   3'- aguaCCUCCUGuCgCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 81523 0.7 0.74443
Target:  5'- gCGU-GAGcuCGGCGGCcGCGGCGGCg -3'
miRNA:   3'- aGUAcCUCcuGUCGCCGuUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 81596 0.68 0.853059
Target:  5'- gUCGccGGGGccgcCGGCGcGCAGCAGCAGg -3'
miRNA:   3'- -AGUacCUCCu---GUCGC-CGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 82633 0.72 0.589886
Target:  5'- -gGUGGgcgcGGGACcccccuGCGGCGAgGGCGGCc -3'
miRNA:   3'- agUACC----UCCUGu-----CGCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 83043 0.8 0.225643
Target:  5'- -gGUGGAGacgcGCAGCGGCAGCAGCuuGGCc -3'
miRNA:   3'- agUACCUCc---UGUCGCCGUUGUCG--UCG- -5'
29370 5' -55 NC_006151.1 + 84409 0.7 0.72445
Target:  5'- ---gGGuGGGCgcggugauaaGGCGGCGcGCGGCGGCg -3'
miRNA:   3'- aguaCCuCCUG----------UCGCCGU-UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 85643 0.68 0.831586
Target:  5'- cCAgcGGGGacgcgcccgccucgcGCAGCGGCGACGGCAaccuGCg -3'
miRNA:   3'- aGUacCUCC---------------UGUCGCCGUUGUCGU----CG- -5'
29370 5' -55 NC_006151.1 + 86341 0.67 0.886138
Target:  5'- cCGUGGgcccggacuucuucgGGGACAuGCGGCucucggacgAGgAGCGGCu -3'
miRNA:   3'- aGUACC---------------UCCUGU-CGCCG---------UUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 88068 0.68 0.84496
Target:  5'- --cUGcGAGGGCAGgcccucgaGGCGGCAGguGUa -3'
miRNA:   3'- aguAC-CUCCUGUCg-------CCGUUGUCguCG- -5'
29370 5' -55 NC_006151.1 + 88303 0.66 0.90359
Target:  5'- aCGUGGGGGcGCAG-GGCcuCGGagaAGCg -3'
miRNA:   3'- aGUACCUCC-UGUCgCCGuuGUCg--UCG- -5'
29370 5' -55 NC_006151.1 + 89126 0.67 0.876083
Target:  5'- ----cGAGGGCGGCGGgAcCGGgGGCg -3'
miRNA:   3'- aguacCUCCUGUCGCCgUuGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 89265 0.71 0.673223
Target:  5'- gUCGUGGucGACGgcgccGCGGCGAUGGCcGCc -3'
miRNA:   3'- -AGUACCucCUGU-----CGCCGUUGUCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.