miRNA display CGI


Results 121 - 140 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 89791 0.66 0.921684
Target:  5'- cCAcUGGAGGGaggaGGCGGCcgagaaGACAG-GGCg -3'
miRNA:   3'- aGU-ACCUCCUg---UCGCCG------UUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 90332 0.68 0.816847
Target:  5'- gCAUGGgcAGGcGCAGCauggccaugaggcuGGCGACgccgAGCAGCa -3'
miRNA:   3'- aGUACC--UCC-UGUCG--------------CCGUUG----UCGUCG- -5'
29370 5' -55 NC_006151.1 + 90397 0.67 0.890308
Target:  5'- ---gGGAcGGACAGCaugcaGGCGGCgAGgAGCg -3'
miRNA:   3'- aguaCCU-CCUGUCG-----CCGUUG-UCgUCG- -5'
29370 5' -55 NC_006151.1 + 90453 0.67 0.890308
Target:  5'- gCAgcgGGuGGACucgAGCGcGCAGCGcCAGCa -3'
miRNA:   3'- aGUa--CCuCCUG---UCGC-CGUUGUcGUCG- -5'
29370 5' -55 NC_006151.1 + 90668 0.68 0.856241
Target:  5'- ---cGGGGcGGCGggccgcuugucccccGCGGCGGgGGCGGCg -3'
miRNA:   3'- aguaCCUC-CUGU---------------CGCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 90721 0.72 0.631553
Target:  5'- ---cGcAGG-CGGCGGCGACGGUGGCg -3'
miRNA:   3'- aguaCcUCCuGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 90754 0.68 0.819486
Target:  5'- ---cGG-GGGCGGCGGgcACGGUGGCg -3'
miRNA:   3'- aguaCCuCCUGUCGCCguUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 91541 0.67 0.868627
Target:  5'- gCGUGcgcGAGGugcGCGGCcagcggGGCGAUGGCGGCg -3'
miRNA:   3'- aGUAC---CUCC---UGUCG------CCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 93432 0.67 0.860951
Target:  5'- ---aGGAGGAgGGgGGCgAGCGGgGGUc -3'
miRNA:   3'- aguaCCUCCUgUCgCCG-UUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 95273 0.74 0.498637
Target:  5'- aUCAUGGcGuugacgaaGACGGCGGCGACGcgcGCGGCc -3'
miRNA:   3'- -AGUACCuC--------CUGUCGCCGUUGU---CGUCG- -5'
29370 5' -55 NC_006151.1 + 95429 0.69 0.773608
Target:  5'- ---aGGuuGGAC-GUGGCGAgGGCGGCg -3'
miRNA:   3'- aguaCCu-CCUGuCGCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 96046 0.71 0.662836
Target:  5'- ---aGGGGGuuCAGCaGGUAGCAGCuGGCg -3'
miRNA:   3'- aguaCCUCCu-GUCG-CCGUUGUCG-UCG- -5'
29370 5' -55 NC_006151.1 + 96200 0.74 0.495694
Target:  5'- cCAUGGGGcgccgcgucgccguGGCGGCGGCcGCGGCgaGGCg -3'
miRNA:   3'- aGUACCUC--------------CUGUCGCCGuUGUCG--UCG- -5'
29370 5' -55 NC_006151.1 + 96709 0.74 0.518449
Target:  5'- gCGccGGGGGCGGCGGCGGacgaggaGGCGGCg -3'
miRNA:   3'- aGUacCUCCUGUCGCCGUUg------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 97138 0.72 0.641992
Target:  5'- cCAUGuGGGcCAGCGGCAgguccaccgaGCcGCAGCg -3'
miRNA:   3'- aGUACcUCCuGUCGCCGU----------UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 97353 0.72 0.621116
Target:  5'- gCggGGaAGGccGCGGCGGCGGCGggcGCGGCg -3'
miRNA:   3'- aGuaCC-UCC--UGUCGCCGUUGU---CGUCG- -5'
29370 5' -55 NC_006151.1 + 97488 0.7 0.70414
Target:  5'- aCGUGGAcGcGCAGCGccucGCGGCGGUGGCg -3'
miRNA:   3'- aGUACCU-CcUGUCGC----CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 99555 0.67 0.886138
Target:  5'- aCGUGGGcGcGGCGcgcGCGGCGcugcugcgcgaggugGCGGCGGCc -3'
miRNA:   3'- aGUACCU-C-CUGU---CGCCGU---------------UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 102498 0.68 0.853059
Target:  5'- uUCAUGGAcgccgcggcgcgGGACcccGGCGGCGucuacgaccagACGGUGGUg -3'
miRNA:   3'- -AGUACCU------------CCUG---UCGCCGU-----------UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 103237 0.73 0.569213
Target:  5'- -gAUGGAGGACcugcuGCGGCacauccgcgccAugGGCGGCc -3'
miRNA:   3'- agUACCUCCUGu----CGCCG-----------UugUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.