miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 139505 1.13 0.00159
Target:  5'- gUCAUGGAGGACAGCGGCAACAGCAGCg -3'
miRNA:   3'- -AGUACCUCCUGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 25364 0.86 0.106221
Target:  5'- aUCGgaugGGAGG-CGGCGGUGACGGCGGCg -3'
miRNA:   3'- -AGUa---CCUCCuGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 66773 0.84 0.134954
Target:  5'- ---cGGccgcccucGGGACGGCGGCGGCGGCGGCg -3'
miRNA:   3'- aguaCC--------UCCUGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 30856 0.83 0.157922
Target:  5'- ---aGGAGGACuGGCGGCGGCGGCGGa -3'
miRNA:   3'- aguaCCUCCUG-UCGCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 40556 0.81 0.199001
Target:  5'- -gGUGGuGGA-AGCGGCGGCGGCGGCc -3'
miRNA:   3'- agUACCuCCUgUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 11813 0.8 0.225643
Target:  5'- -gGUGG-GGugGGgGGCGGCGGCGGCu -3'
miRNA:   3'- agUACCuCCugUCgCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 83043 0.8 0.225643
Target:  5'- -gGUGGAGacgcGCAGCGGCAGCAGCuuGGCc -3'
miRNA:   3'- agUACCUCc---UGUCGCCGUUGUCG--UCG- -5'
29370 5' -55 NC_006151.1 + 139678 0.8 0.249084
Target:  5'- aCA-GGcccuGcGGCAGCGGCGGCGGCAGCa -3'
miRNA:   3'- aGUaCCu---C-CUGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 71765 0.8 0.25525
Target:  5'- gCGUGGuccuGcGGCAGCGGCGGCGGgGGCu -3'
miRNA:   3'- aGUACCu---C-CUGUCGCCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 104900 0.79 0.274501
Target:  5'- -gGUGGuGGAC-GCGGCGGCGGCGcGCg -3'
miRNA:   3'- agUACCuCCUGuCGCCGUUGUCGU-CG- -5'
29370 5' -55 NC_006151.1 + 29578 0.79 0.287969
Target:  5'- ---gGGAGGACGgaucGCGGCGGCuGCGGCc -3'
miRNA:   3'- aguaCCUCCUGU----CGCCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 60862 0.78 0.309137
Target:  5'- cCAUGacGAGGACccGCGGCAgccgcGCAGCAGCc -3'
miRNA:   3'- aGUAC--CUCCUGu-CGCCGU-----UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 128004 0.78 0.316452
Target:  5'- gUCGcGGucgcGGGGCGGCGGCGACGGCGucuGCg -3'
miRNA:   3'- -AGUaCC----UCCUGUCGCCGUUGUCGU---CG- -5'
29370 5' -55 NC_006151.1 + 122439 0.77 0.347009
Target:  5'- cCcgGGAGGcggaGGCGGCGuccACGGCGGCg -3'
miRNA:   3'- aGuaCCUCCug--UCGCCGU---UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 54070 0.77 0.36306
Target:  5'- -gGUGGcgcgcGGACccucuGCGGCGGCGGCGGCg -3'
miRNA:   3'- agUACCu----CCUGu----CGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 128046 0.77 0.371276
Target:  5'- -------cGGCAGCGGCGGCAGCGGCg -3'
miRNA:   3'- aguaccucCUGUCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 40522 0.77 0.371276
Target:  5'- ---cGGAGGugGcuGCGGCGGCGGCGGa -3'
miRNA:   3'- aguaCCUCCugU--CGCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 72458 0.77 0.371276
Target:  5'- ---cGGGGGACAGCGuaGGCAGC-GCa -3'
miRNA:   3'- aguaCCUCCUGUCGCcgUUGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 78386 0.76 0.388086
Target:  5'- ---gGGAGGAgggGGCGGCcACGGCGGCu -3'
miRNA:   3'- aguaCCUCCUg--UCGCCGuUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 111980 0.76 0.411557
Target:  5'- -gGUGGGGGugAGCGGUgcGgcuacgacgucgacGCGGCGGCg -3'
miRNA:   3'- agUACCUCCugUCGCCG--U--------------UGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.