miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 1001 0.68 0.836659
Target:  5'- -aGUGGGcGAUGGuuGCAACGGCAGUu -3'
miRNA:   3'- agUACCUcCUGUCgcCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 2282 0.7 0.734486
Target:  5'- gCcgGcGGGGcgcccGCGGCGGCGACGGC-GCc -3'
miRNA:   3'- aGuaC-CUCC-----UGUCGCCGUUGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 2578 0.7 0.701069
Target:  5'- -gGUGGGGaGCacgcgcuggcgguaGGCGcGCGGCGGCAGCg -3'
miRNA:   3'- agUACCUCcUG--------------UCGC-CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 3079 0.69 0.773608
Target:  5'- ---cGGuGGGCGaaGGCGGCgAGCAGCg -3'
miRNA:   3'- aguaCCuCCUGUcgCCGUUG-UCGUCG- -5'
29370 5' -55 NC_006151.1 + 3216 0.66 0.91231
Target:  5'- cUCggGGucGGCuaucugccgcauccaGGCGGCG-CGGCGGCg -3'
miRNA:   3'- -AGuaCCucCUG---------------UCGCCGUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 3524 0.74 0.518449
Target:  5'- ---aGGAGGACAGCaGC-GCGGgAGCg -3'
miRNA:   3'- aguaCCUCCUGUCGcCGuUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 4254 0.67 0.860951
Target:  5'- ---gGGcAGGGCAGCaGGCGcucgaggacgccGCGGCAGg -3'
miRNA:   3'- aguaCC-UCCUGUCG-CCGU------------UGUCGUCg -5'
29370 5' -55 NC_006151.1 + 4326 0.68 0.810629
Target:  5'- ---cGGccGGGcugcGCGGCGGCGAaGGCGGCg -3'
miRNA:   3'- aguaCC--UCC----UGUCGCCGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 4549 0.68 0.84496
Target:  5'- cCAUGGcguccccGAUGuGCGGCAGCGGCGGg -3'
miRNA:   3'- aGUACCuc-----CUGU-CGCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 4766 0.66 0.902948
Target:  5'- cUCcgGGAugaagacGGGCAcgggcccggccGCGGCG-CGGUAGCg -3'
miRNA:   3'- -AGuaCCU-------CCUGU-----------CGCCGUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 4907 0.68 0.819486
Target:  5'- gCcgGGccAGGGCuccccgAGCGGgGugAGCAGCg -3'
miRNA:   3'- aGuaCC--UCCUG------UCGCCgUugUCGUCG- -5'
29370 5' -55 NC_006151.1 + 5229 0.75 0.432231
Target:  5'- ---aGGAGGccgagcgccgcGCGGCGGCGGCGGgGGCc -3'
miRNA:   3'- aguaCCUCC-----------UGUCGCCGUUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 5345 0.69 0.783084
Target:  5'- ---cGGAGGGCGcccucuccggcGCGGCGcCGGCGGg -3'
miRNA:   3'- aguaCCUCCUGU-----------CGCCGUuGUCGUCg -5'
29370 5' -55 NC_006151.1 + 6114 0.69 0.773608
Target:  5'- ---aGGAGGACGG-GGCGGCcucGUGGCu -3'
miRNA:   3'- aguaCCUCCUGUCgCCGUUGu--CGUCG- -5'
29370 5' -55 NC_006151.1 + 6150 0.75 0.423167
Target:  5'- ---cGcGAGGACGGCGGCcucggccuCGGCGGCg -3'
miRNA:   3'- aguaC-CUCCUGUCGCCGuu------GUCGUCG- -5'
29370 5' -55 NC_006151.1 + 6224 0.67 0.883311
Target:  5'- ---cGGAGGAgCcGCGGCGcCGGgAGCc -3'
miRNA:   3'- aguaCCUCCU-GuCGCCGUuGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 9991 0.68 0.856241
Target:  5'- ---aGGaAGGAaaaaaaaccucgagAGCGGCGGCGGCGGUc -3'
miRNA:   3'- aguaCC-UCCUg-------------UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 10093 0.68 0.828165
Target:  5'- ---cGGAGGAaGGCGGguGCGGaggaggaAGCg -3'
miRNA:   3'- aguaCCUCCUgUCGCCguUGUCg------UCG- -5'
29370 5' -55 NC_006151.1 + 10198 0.7 0.70414
Target:  5'- gUCGcGGcgcGGGCGGCGGCuGCAgagGCGGCu -3'
miRNA:   3'- -AGUaCCu--CCUGUCGCCGuUGU---CGUCG- -5'
29370 5' -55 NC_006151.1 + 10461 0.73 0.548725
Target:  5'- ---aGGAGGAC-GCGGCGGCGGUgaaggaggagAGCc -3'
miRNA:   3'- aguaCCUCCUGuCGCCGUUGUCG----------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.