miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 118775 0.66 0.909867
Target:  5'- ---cGGAaccuGGAC-GCGGUGGCGcGCGGCg -3'
miRNA:   3'- aguaCCU----CCUGuCGCCGUUGU-CGUCG- -5'
29370 5' -55 NC_006151.1 + 36620 0.66 0.909867
Target:  5'- gCcgGGccGGucuCGGCgcccGGCGGCGGCGGCg -3'
miRNA:   3'- aGuaCCu-CCu--GUCG----CCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 103835 0.66 0.90925
Target:  5'- cCGUGGAgaugcucGGGCGGCuGCG-CGcGCAGCc -3'
miRNA:   3'- aGUACCU-------CCUGUCGcCGUuGU-CGUCG- -5'
29370 5' -55 NC_006151.1 + 138174 0.66 0.90359
Target:  5'- uUCGUGGcGGACguGGCcauGGCGcccguGCuGCGGCa -3'
miRNA:   3'- -AGUACCuCCUG--UCG---CCGU-----UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 88303 0.66 0.90359
Target:  5'- aCGUGGGGGcGCAG-GGCcuCGGagaAGCg -3'
miRNA:   3'- aGUACCUCC-UGUCgCCGuuGUCg--UCG- -5'
29370 5' -55 NC_006151.1 + 15804 0.66 0.90359
Target:  5'- ---gGGAGGACGGgGGggaaGACGGCGa- -3'
miRNA:   3'- aguaCCUCCUGUCgCCg---UUGUCGUcg -5'
29370 5' -55 NC_006151.1 + 48729 0.66 0.90359
Target:  5'- ---cGaAGGGCAcgcccGCGGCGuCGGCGGCa -3'
miRNA:   3'- aguaCcUCCUGU-----CGCCGUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 103337 0.66 0.90359
Target:  5'- --cUGGuGca-GGCGGC-GCAGCAGCg -3'
miRNA:   3'- aguACCuCcugUCGCCGuUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 105274 0.66 0.90359
Target:  5'- ---gGGAGGACuuugGGCGcGCGcGCGGCcGCg -3'
miRNA:   3'- aguaCCUCCUG----UCGC-CGU-UGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 62495 0.66 0.90359
Target:  5'- aCGUGGAcaaGGC-GCGGaCGACGGCccGGCg -3'
miRNA:   3'- aGUACCUc--CUGuCGCC-GUUGUCG--UCG- -5'
29370 5' -55 NC_006151.1 + 64387 0.66 0.90359
Target:  5'- cCGUGGccaGCccGCGGC-GCAGCAGCg -3'
miRNA:   3'- aGUACCuccUGu-CGCCGuUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 4766 0.66 0.902948
Target:  5'- cUCcgGGAugaagacGGGCAcgggcccggccGCGGCG-CGGUAGCg -3'
miRNA:   3'- -AGuaCCU-------CCUGU-----------CGCCGUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 142011 0.66 0.897069
Target:  5'- gCGUGGGGcGGguGUGGCAccACguGGguGCa -3'
miRNA:   3'- aGUACCUC-CUguCGCCGU--UG--UCguCG- -5'
29370 5' -55 NC_006151.1 + 69043 0.66 0.897069
Target:  5'- -gGUGGcGucaaagaccGGCAGCGGCGGCuccucgucccccAGCGGCa -3'
miRNA:   3'- agUACCuC---------CUGUCGCCGUUG------------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 131837 0.66 0.896404
Target:  5'- cCGUGGugaugagcGGGGCGGCcgagacgcgcgccGGCGGCgucgggucgcagGGCAGCa -3'
miRNA:   3'- aGUACC--------UCCUGUCG-------------CCGUUG------------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 141247 0.67 0.893041
Target:  5'- cCAcGGAGGGCGaggagauccagucgcGgGGCcuCGGCGGCu -3'
miRNA:   3'- aGUaCCUCCUGU---------------CgCCGuuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 17400 0.67 0.890308
Target:  5'- -----cGGGGCGcGUGGCGcGCGGCAGCa -3'
miRNA:   3'- aguaccUCCUGU-CGCCGU-UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 90453 0.67 0.890308
Target:  5'- gCAgcgGGuGGACucgAGCGcGCAGCGcCAGCa -3'
miRNA:   3'- aGUa--CCuCCUG---UCGC-CGUUGUcGUCG- -5'
29370 5' -55 NC_006151.1 + 90397 0.67 0.890308
Target:  5'- ---gGGAcGGACAGCaugcaGGCGGCgAGgAGCg -3'
miRNA:   3'- aguaCCU-CCUGUCG-----CCGUUG-UCgUCG- -5'
29370 5' -55 NC_006151.1 + 59135 0.67 0.890308
Target:  5'- -gGUGGGuggcgcccgcGGGCGGguccaggcCGGCGucgcGCAGCAGCg -3'
miRNA:   3'- agUACCU----------CCUGUC--------GCCGU----UGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.