miRNA display CGI


Results 81 - 100 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 56294 0.67 0.553038
Target:  5'- cCGCGGCGgaGGCGga--CGCCG-CGCGGu -3'
miRNA:   3'- -GCGCCGC--UCGCacgaGCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 123853 0.67 0.553038
Target:  5'- gCGgGGCGccgucgcgcuAGCGcUGCUgcugcuggCGCuCGCCGCGGc -3'
miRNA:   3'- -GCgCCGC----------UCGC-ACGA--------GCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 38275 0.67 0.553038
Target:  5'- aCGUGGCc-GCGgcccgGCUCgccgagGCCGCCGCGcGg -3'
miRNA:   3'- -GCGCCGcuCGCa----CGAG------CGGCGGUGC-C- -5'
29371 3' -62.9 NC_006151.1 + 2545 0.67 0.553038
Target:  5'- gCGCuGGCGGGCcauguccuUGCa-GCCGuCCACGGu -3'
miRNA:   3'- -GCG-CCGCUCGc-------ACGagCGGC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 141402 0.67 0.553038
Target:  5'- aGCGGCGuGUccggcgaucgGUGCgggCGCgGCC-CGGc -3'
miRNA:   3'- gCGCCGCuCG----------CACGa--GCGgCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 88911 0.67 0.553038
Target:  5'- gCGUcgGGCGAGCGgaagCGcCCGCgGCGGu -3'
miRNA:   3'- -GCG--CCGCUCGCacgaGC-GGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 61644 0.67 0.562551
Target:  5'- -cCGGCG-GCGUGUggacgCGCCaGCCGCu- -3'
miRNA:   3'- gcGCCGCuCGCACGa----GCGG-CGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 121782 0.67 0.562551
Target:  5'- cCGCGGUGGuGCGcgaGCUgGCC-CCACGc -3'
miRNA:   3'- -GCGCCGCU-CGCa--CGAgCGGcGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 74731 0.67 0.581701
Target:  5'- gGCGGCGuuguGCGUGUUgCGCCaguaGCUcUGGa -3'
miRNA:   3'- gCGCCGCu---CGCACGA-GCGG----CGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 133160 0.67 0.581701
Target:  5'- gGCGGCGcgGGCGUGggcCUCGgCCacgcgucCCACGGc -3'
miRNA:   3'- gCGCCGC--UCGCAC---GAGC-GGc------GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 99214 0.67 0.581701
Target:  5'- gGCGGUGcaggccAGCGc-CUCGCCGCUGCaGGu -3'
miRNA:   3'- gCGCCGC------UCGCacGAGCGGCGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 91743 0.67 0.581701
Target:  5'- uCGCGGCGGGCGagcggGCUCGg-GCgGgCGGu -3'
miRNA:   3'- -GCGCCGCUCGCa----CGAGCggCGgU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 11825 0.67 0.581701
Target:  5'- gGCGGCG-GCG-GCUCGCC-CUcCGu -3'
miRNA:   3'- gCGCCGCuCGCaCGAGCGGcGGuGCc -5'
29371 3' -62.9 NC_006151.1 + 123032 0.67 0.572107
Target:  5'- cCGUGGCGugGGCGgaccUGCCGgCCGCGGc -3'
miRNA:   3'- -GCGCCGC--UCGCacgaGCGGC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 105676 0.67 0.572107
Target:  5'- aCGCGGCcuacGGCGgcgcgggGCcgaCGCCGgCGCGGc -3'
miRNA:   3'- -GCGCCGc---UCGCa------CGa--GCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 11329 0.67 0.572107
Target:  5'- cCGC-GCGGGCGauaccgcGCggGCCGCCcGCGGg -3'
miRNA:   3'- -GCGcCGCUCGCa------CGagCGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 5339 0.67 0.572107
Target:  5'- cCGCGGCGgagGGCGccCUCuCCGgCGCGGc -3'
miRNA:   3'- -GCGCCGC---UCGCacGAGcGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 46950 0.67 0.57115
Target:  5'- cCGCGGacugGGGCGacccuguugcugcUGCggcCGCCGCCGCu- -3'
miRNA:   3'- -GCGCCg---CUCGC-------------ACGa--GCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 134174 0.67 0.563505
Target:  5'- gGUGGCGcugcccaccggauacGCGaUGCUCGUCGCgcagCGCGGg -3'
miRNA:   3'- gCGCCGCu--------------CGC-ACGAGCGGCG----GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 4227 0.67 0.572107
Target:  5'- gCGCgGGCGGGCGcggGCa-GCCGgaGCGGg -3'
miRNA:   3'- -GCG-CCGCUCGCa--CGagCGGCggUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.