miRNA display CGI


Results 121 - 140 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 117547 0.67 0.553038
Target:  5'- aCGCGGCGA-CGcGC-CGCgGCCAgaaGGg -3'
miRNA:   3'- -GCGCCGCUcGCaCGaGCGgCGGUg--CC- -5'
29371 3' -62.9 NC_006151.1 + 127330 0.67 0.556838
Target:  5'- cCGCgGGCGGGgGUGCUgGUacacguggucggucuCGCCcuggGCGGg -3'
miRNA:   3'- -GCG-CCGCUCgCACGAgCG---------------GCGG----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 63752 0.67 0.561598
Target:  5'- gCGuCGGCGGgGCGUcCUCGgCGCCcccgcgucgccagGCGGg -3'
miRNA:   3'- -GC-GCCGCU-CGCAcGAGCgGCGG-------------UGCC- -5'
29371 3' -62.9 NC_006151.1 + 36693 0.67 0.562551
Target:  5'- aGCaccGCGAGCcccUGCUcgacgagccCGCCGCCGCGa -3'
miRNA:   3'- gCGc--CGCUCGc--ACGA---------GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 36020 0.67 0.562551
Target:  5'- gGCGGC-AGCcaggGCUccCGgCGCCGCGGc -3'
miRNA:   3'- gCGCCGcUCGca--CGA--GCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 79092 0.67 0.562551
Target:  5'- gCGCGcGCGAGCGaGCgccccucCGUCguggcuggGCCACGGc -3'
miRNA:   3'- -GCGC-CGCUCGCaCGa------GCGG--------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 117579 0.67 0.562551
Target:  5'- cCGCGGagGAugggccGCGUGg-CGCCGCCGCa- -3'
miRNA:   3'- -GCGCCg-CU------CGCACgaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 124849 0.68 0.515522
Target:  5'- aCGCGGCGcGUGUGCa-GCCugGCCAagUGGc -3'
miRNA:   3'- -GCGCCGCuCGCACGagCGG--CGGU--GCC- -5'
29371 3' -62.9 NC_006151.1 + 2332 0.68 0.515522
Target:  5'- gGCGGCcucGGCGUcggGCUCcaGCagCGCCGCGGc -3'
miRNA:   3'- gCGCCGc--UCGCA---CGAG--CG--GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 117246 0.68 0.515522
Target:  5'- aCGuCGGCGGGCccgagGCgcggGCCGCgCGCGGc -3'
miRNA:   3'- -GC-GCCGCUCGca---CGag--CGGCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 111366 0.68 0.515522
Target:  5'- gCGgGGCGAGgGccccucGCcgucgUCGCCGCCGcCGGc -3'
miRNA:   3'- -GCgCCGCUCgCa-----CG-----AGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 70915 0.68 0.515522
Target:  5'- uGCcuGGCGcGCGUGCUggCGCUGCacgACGGc -3'
miRNA:   3'- gCG--CCGCuCGCACGA--GCGGCGg--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 130556 0.68 0.515522
Target:  5'- gGCGGCGcGC-UGC-CGCC-CCACGa -3'
miRNA:   3'- gCGCCGCuCGcACGaGCGGcGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 24499 0.68 0.515522
Target:  5'- -cCGGCGAGCccguaaaaguUGggCGCCGCCACGu -3'
miRNA:   3'- gcGCCGCUCGc---------ACgaGCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 81369 0.68 0.515522
Target:  5'- -cCGGCGGGCGccaGCgcgaGCCgcGCCGCGGc -3'
miRNA:   3'- gcGCCGCUCGCa--CGag--CGG--CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 135954 0.68 0.515522
Target:  5'- uCGCGGCGcgGGaCGUcCUCGagGCCAUGGa -3'
miRNA:   3'- -GCGCCGC--UC-GCAcGAGCggCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 72342 0.68 0.524812
Target:  5'- gGCcGCGAGCacg-UCGCCGCCGCaGGg -3'
miRNA:   3'- gCGcCGCUCGcacgAGCGGCGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 131446 0.68 0.524812
Target:  5'- gGCGGCGGGCGgaaGUccgggCGCCGCaccucgccCACGa -3'
miRNA:   3'- gCGCCGCUCGCa--CGa----GCGGCG--------GUGCc -5'
29371 3' -62.9 NC_006151.1 + 130628 0.68 0.524812
Target:  5'- uCGCGGCucacGAGCGccGCcgagGCCGCCuGCGGc -3'
miRNA:   3'- -GCGCCG----CUCGCa-CGag--CGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 94674 0.68 0.506301
Target:  5'- -cCGGCGGGCa-GCUccccgaaggcCGCgGCCACGGa -3'
miRNA:   3'- gcGCCGCUCGcaCGA----------GCGgCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.