Results 141 - 160 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 136428 | 0.68 | 0.488074 |
Target: 5'- cCGCGGCG-GCGcacGC-CGCgCGCUACGu -3' miRNA: 3'- -GCGCCGCuCGCa--CGaGCG-GCGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 32245 | 0.68 | 0.488074 |
Target: 5'- cCGCGGCGAcc--GC-CGCCGCCGCu- -3' miRNA: 3'- -GCGCCGCUcgcaCGaGCGGCGGUGcc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 94019 | 0.68 | 0.488074 |
Target: 5'- cCGCaGCGccgcGCGcacguagcGCUCGCgCGCCGCGGc -3' miRNA: 3'- -GCGcCGCu---CGCa-------CGAGCG-GCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 91573 | 0.68 | 0.506301 |
Target: 5'- gGCGGCGcgcGCGUGCUCcagguGCuCGUCGCu- -3' miRNA: 3'- gCGCCGCu--CGCACGAG-----CG-GCGGUGcc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 97363 | 0.68 | 0.506301 |
Target: 5'- cCGCGGCG-GCG-GCg-GgCGCgGCGGg -3' miRNA: 3'- -GCGCCGCuCGCaCGagCgGCGgUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 130628 | 0.68 | 0.524812 |
Target: 5'- uCGCGGCucacGAGCGccGCcgagGCCGCCuGCGGc -3' miRNA: 3'- -GCGCCG----CUCGCa-CGag--CGGCGG-UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 131446 | 0.68 | 0.524812 |
Target: 5'- gGCGGCGGGCGgaaGUccgggCGCCGCaccucgccCACGa -3' miRNA: 3'- gCGCCGCUCGCa--CGa----GCGGCG--------GUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 72342 | 0.68 | 0.524812 |
Target: 5'- gGCcGCGAGCacg-UCGCCGCCGCaGGg -3' miRNA: 3'- gCGcCGCUCGcacgAGCGGCGGUG-CC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 135954 | 0.68 | 0.515522 |
Target: 5'- uCGCGGCGcgGGaCGUcCUCGagGCCAUGGa -3' miRNA: 3'- -GCGCCGC--UC-GCAcGAGCggCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 81369 | 0.68 | 0.515522 |
Target: 5'- -cCGGCGGGCGccaGCgcgaGCCgcGCCGCGGc -3' miRNA: 3'- gcGCCGCUCGCa--CGag--CGG--CGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 24499 | 0.68 | 0.515522 |
Target: 5'- -cCGGCGAGCccguaaaaguUGggCGCCGCCACGu -3' miRNA: 3'- gcGCCGCUCGc---------ACgaGCGGCGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 130556 | 0.68 | 0.515522 |
Target: 5'- gGCGGCGcGC-UGC-CGCC-CCACGa -3' miRNA: 3'- gCGCCGCuCGcACGaGCGGcGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 124849 | 0.68 | 0.515522 |
Target: 5'- aCGCGGCGcGUGUGCa-GCCugGCCAagUGGc -3' miRNA: 3'- -GCGCCGCuCGCACGagCGG--CGGU--GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 2332 | 0.68 | 0.515522 |
Target: 5'- gGCGGCcucGGCGUcggGCUCcaGCagCGCCGCGGc -3' miRNA: 3'- gCGCCGc--UCGCA---CGAG--CG--GCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 117246 | 0.68 | 0.515522 |
Target: 5'- aCGuCGGCGGGCccgagGCgcggGCCGCgCGCGGc -3' miRNA: 3'- -GC-GCCGCUCGca---CGag--CGGCG-GUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 111366 | 0.68 | 0.515522 |
Target: 5'- gCGgGGCGAGgGccccucGCcgucgUCGCCGCCGcCGGc -3' miRNA: 3'- -GCgCCGCUCgCa-----CG-----AGCGGCGGU-GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 70915 | 0.68 | 0.515522 |
Target: 5'- uGCcuGGCGcGCGUGCUggCGCUGCacgACGGc -3' miRNA: 3'- gCG--CCGCuCGCACGA--GCGGCGg--UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 94674 | 0.68 | 0.506301 |
Target: 5'- -cCGGCGGGCa-GCUccccgaaggcCGCgGCCACGGa -3' miRNA: 3'- gcGCCGCUCGcaCGA----------GCGgCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 84363 | 0.68 | 0.506301 |
Target: 5'- cCGCGGCG-GUGaucGCgaUCGCgGCgCGCGGg -3' miRNA: 3'- -GCGCCGCuCGCa--CG--AGCGgCG-GUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 137762 | 0.68 | 0.506301 |
Target: 5'- cCGCGGCcuggcgcGCGUGCUCcagcaggccguGCUGCUggaGCGGg -3' miRNA: 3'- -GCGCCGcu-----CGCACGAG-----------CGGCGG---UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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