Results 61 - 80 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 82652 | 0.72 | 0.280063 |
Target: 5'- uGCGGCGAGgGcggcccacccUGCg-GCgCGCCGCGGg -3' miRNA: 3'- gCGCCGCUCgC----------ACGagCG-GCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 69629 | 0.72 | 0.319486 |
Target: 5'- uCGCGGuCGGcgucccgcGCGUGCggCGCCGCCG-GGu -3' miRNA: 3'- -GCGCC-GCU--------CGCACGa-GCGGCGGUgCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 106350 | 0.72 | 0.305898 |
Target: 5'- aCGCGGUGGacacgcuggacGCGgGCgcgCGcCCGCCGCGGc -3' miRNA: 3'- -GCGCCGCU-----------CGCaCGa--GC-GGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 115177 | 0.72 | 0.312636 |
Target: 5'- gCGCGGCaGGGgGcGCUCcagccaGCgCGCCGCGGg -3' miRNA: 3'- -GCGCCG-CUCgCaCGAG------CG-GCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 2114 | 0.72 | 0.286355 |
Target: 5'- cCGCGGgGc-CG-GCcgUCGCCGCCGCGGa -3' miRNA: 3'- -GCGCCgCucGCaCG--AGCGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 3247 | 0.72 | 0.299272 |
Target: 5'- gCGCGGCG-GCGgaGCggggCGCCGCgGCGc -3' miRNA: 3'- -GCGCCGCuCGCa-CGa---GCGGCGgUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 113646 | 0.72 | 0.286355 |
Target: 5'- gCGCGGCGAcGCGcUGCgcaaggcgcagaUCGCCGCCGa-- -3' miRNA: 3'- -GCGCCGCU-CGC-ACG------------AGCGGCGGUgcc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 135166 | 0.72 | 0.299272 |
Target: 5'- gCGCGGCccggacGGGCGccgGCU-GCCGCCGcCGGg -3' miRNA: 3'- -GCGCCG------CUCGCa--CGAgCGGCGGU-GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 29589 | 0.72 | 0.292758 |
Target: 5'- uCGCGGCGGcuGCG-GC-CGCgGCgGCGGg -3' miRNA: 3'- -GCGCCGCU--CGCaCGaGCGgCGgUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 128189 | 0.72 | 0.280063 |
Target: 5'- --aGGCGAGCGUGCcgCGCU-CCAUGGc -3' miRNA: 3'- gcgCCGCUCGCACGa-GCGGcGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 3408 | 0.72 | 0.299272 |
Target: 5'- cCGCGGCGuGUGgGuCUCGCCGgC-CGGg -3' miRNA: 3'- -GCGCCGCuCGCaC-GAGCGGCgGuGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 130887 | 0.72 | 0.319486 |
Target: 5'- gGCGGCGguggaGGCGgcgGCcgUCGCCGUCGuCGGu -3' miRNA: 3'- gCGCCGC-----UCGCa--CG--AGCGGCGGU-GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 134258 | 0.72 | 0.278197 |
Target: 5'- uCGCGGCGAG-GUGCaggCgauuguagccccggGCCGCCcACGGg -3' miRNA: 3'- -GCGCCGCUCgCACGa--G--------------CGGCGG-UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 119051 | 0.72 | 0.305898 |
Target: 5'- gGCGGCGccGCG-GC-CGCCuCCGCGGg -3' miRNA: 3'- gCGCCGCu-CGCaCGaGCGGcGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 100668 | 0.72 | 0.312636 |
Target: 5'- gCGCGGCGuGCuggcGCUCGUCGCgACGc -3' miRNA: 3'- -GCGCCGCuCGca--CGAGCGGCGgUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 57102 | 0.72 | 0.299272 |
Target: 5'- gCGCcGCGAGCa-GCgcgCGCCGCCGCGc -3' miRNA: 3'- -GCGcCGCUCGcaCGa--GCGGCGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 130350 | 0.72 | 0.305898 |
Target: 5'- cCGCGGCGucGUGguugacgGCcgCGCgCGCCGCGGc -3' miRNA: 3'- -GCGCCGCu-CGCa------CGa-GCG-GCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 90671 | 0.72 | 0.299272 |
Target: 5'- gGCGGCGGGCc-GCUUGucccCCGCgGCGGg -3' miRNA: 3'- gCGCCGCUCGcaCGAGC----GGCGgUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 106796 | 0.72 | 0.286355 |
Target: 5'- cCGCGGCG-GCgGUGCUCGUCGgggccCCGCuGGu -3' miRNA: 3'- -GCGCCGCuCG-CACGAGCGGC-----GGUG-CC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 122957 | 0.72 | 0.280063 |
Target: 5'- cCGCGGgGGGCGcGgaCGCCGgCgACGGg -3' miRNA: 3'- -GCGCCgCUCGCaCgaGCGGC-GgUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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