Results 81 - 100 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 106796 | 0.72 | 0.286355 |
Target: 5'- cCGCGGCG-GCgGUGCUCGUCGgggccCCGCuGGu -3' miRNA: 3'- -GCGCCGCuCG-CACGAGCGGC-----GGUG-CC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 119051 | 0.72 | 0.305898 |
Target: 5'- gGCGGCGccGCG-GC-CGCCuCCGCGGg -3' miRNA: 3'- gCGCCGCu-CGCaCGaGCGGcGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 68019 | 0.72 | 0.319486 |
Target: 5'- gGCGGCGuccagguccaGGCG-GCcCGCCGgCGCGGc -3' miRNA: 3'- gCGCCGC----------UCGCaCGaGCGGCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 100668 | 0.72 | 0.312636 |
Target: 5'- gCGCGGCGuGCuggcGCUCGUCGCgACGc -3' miRNA: 3'- -GCGCCGCuCGca--CGAGCGGCGgUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 65783 | 0.72 | 0.305898 |
Target: 5'- gGCGGCG-GCGaUGg-CGCCGCCcggcGCGGa -3' miRNA: 3'- gCGCCGCuCGC-ACgaGCGGCGG----UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 118947 | 0.71 | 0.333521 |
Target: 5'- aCGCGGCGcugucgcuggaGGC--GCUCGUCGCCGcCGGc -3' miRNA: 3'- -GCGCCGC-----------UCGcaCGAGCGGCGGU-GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 55466 | 0.71 | 0.326447 |
Target: 5'- cCGcCGGgGGGCGcGCgccCGgCGCCGCGGa -3' miRNA: 3'- -GC-GCCgCUCGCaCGa--GCgGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 4795 | 0.71 | 0.333521 |
Target: 5'- cCGCGGCGcgguAGCGgGC-CGCgGCCugGCGGa -3' miRNA: 3'- -GCGCCGC----UCGCaCGaGCGgCGG--UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 131739 | 0.71 | 0.340706 |
Target: 5'- gGUGGCGGGCccggGCgaggCGaCCGUCGCGGu -3' miRNA: 3'- gCGCCGCUCGca--CGa---GC-GGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 84780 | 0.71 | 0.345802 |
Target: 5'- aCGCGGCGcgcgccgccgaggaGGCGcccgagGCgacCGCgGCCGCGGa -3' miRNA: 3'- -GCGCCGC--------------UCGCa-----CGa--GCGgCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 113081 | 0.71 | 0.348003 |
Target: 5'- aGCGcGCGGcCGUcGC-CGCCGCCACcGGg -3' miRNA: 3'- gCGC-CGCUcGCA-CGaGCGGCGGUG-CC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 64466 | 0.71 | 0.333521 |
Target: 5'- gGCGGC--GCGcGC-CGCCGCgGCGGg -3' miRNA: 3'- gCGCCGcuCGCaCGaGCGGCGgUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 136993 | 0.71 | 0.333521 |
Target: 5'- gGCGGCGGGCGcGCgCGCaCGgCGCuGGg -3' miRNA: 3'- gCGCCGCUCGCaCGaGCG-GCgGUG-CC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 131006 | 0.71 | 0.326447 |
Target: 5'- gGCGGUaGAGCGUGC-CGgCGUaGCGGg -3' miRNA: 3'- gCGCCG-CUCGCACGaGCgGCGgUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 86081 | 0.71 | 0.326447 |
Target: 5'- cCGCGcGCGcGCc-GC-CGCCGCCAUGGg -3' miRNA: 3'- -GCGC-CGCuCGcaCGaGCGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 87183 | 0.71 | 0.339982 |
Target: 5'- cCGCGGCGccgccgcAGC-UGCU-GCCGCC-CGGg -3' miRNA: 3'- -GCGCCGC-------UCGcACGAgCGGCGGuGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 1837 | 0.71 | 0.333521 |
Target: 5'- cCGCcgGGcCGAGgGgaccgagGC-CGCCGCCGCGGa -3' miRNA: 3'- -GCG--CC-GCUCgCa------CGaGCGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 58445 | 0.71 | 0.35541 |
Target: 5'- gGUGGCGuGCGcGCgcgCGgCGUCGCGGu -3' miRNA: 3'- gCGCCGCuCGCaCGa--GCgGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 84921 | 0.71 | 0.340706 |
Target: 5'- gCGCGGCGccgccuccGGCGUGCUCuUCGgCACGu -3' miRNA: 3'- -GCGCCGC--------UCGCACGAGcGGCgGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 64614 | 0.71 | 0.333521 |
Target: 5'- aGCGGCGc-CGcGC-CGCCgGCCGCGGg -3' miRNA: 3'- gCGCCGCucGCaCGaGCGG-CGGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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