miRNA display CGI


Results 101 - 120 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 1837 0.71 0.333521
Target:  5'- cCGCcgGGcCGAGgGgaccgagGC-CGCCGCCGCGGa -3'
miRNA:   3'- -GCG--CC-GCUCgCa------CGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 68264 0.71 0.333521
Target:  5'- gCGCGGCGA-CGgucGCggCGCCgggcGCCACGGc -3'
miRNA:   3'- -GCGCCGCUcGCa--CGa-GCGG----CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 64614 0.71 0.333521
Target:  5'- aGCGGCGc-CGcGC-CGCCgGCCGCGGg -3'
miRNA:   3'- gCGCCGCucGCaCGaGCGG-CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 4795 0.71 0.333521
Target:  5'- cCGCGGCGcgguAGCGgGC-CGCgGCCugGCGGa -3'
miRNA:   3'- -GCGCCGC----UCGCaCGaGCGgCGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 84921 0.71 0.340706
Target:  5'- gCGCGGCGccgccuccGGCGUGCUCuUCGgCACGu -3'
miRNA:   3'- -GCGCCGC--------UCGCACGAGcGGCgGUGCc -5'
29371 3' -62.9 NC_006151.1 + 87183 0.71 0.339982
Target:  5'- cCGCGGCGccgccgcAGC-UGCU-GCCGCC-CGGg -3'
miRNA:   3'- -GCGCCGC-------UCGcACGAgCGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 92182 0.71 0.348003
Target:  5'- cCGaCGGCGAcGgGgccGCcgacgCGCCGCCGCGGc -3'
miRNA:   3'- -GC-GCCGCU-CgCa--CGa----GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 113081 0.71 0.348003
Target:  5'- aGCGcGCGGcCGUcGC-CGCCGCCACcGGg -3'
miRNA:   3'- gCGC-CGCUcGCA-CGaGCGGCGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 112970 0.71 0.35541
Target:  5'- cCGUGGCGGacGCGcGCgCGCCGCCGagccUGGg -3'
miRNA:   3'- -GCGCCGCU--CGCaCGaGCGGCGGU----GCC- -5'
29371 3' -62.9 NC_006151.1 + 68143 0.71 0.348003
Target:  5'- cCGCGG--AGCGUGgUCGUgGUCACGGc -3'
miRNA:   3'- -GCGCCgcUCGCACgAGCGgCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 25387 0.71 0.35541
Target:  5'- gGCGGCG-GUGguuCUCGaCCGCgACGGg -3'
miRNA:   3'- gCGCCGCuCGCac-GAGC-GGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 126034 0.71 0.35541
Target:  5'- -uCGGCGA-CGUGggCGCCGCCGuCGGc -3'
miRNA:   3'- gcGCCGCUcGCACgaGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 58445 0.71 0.35541
Target:  5'- gGUGGCGuGCGcGCgcgCGgCGUCGCGGu -3'
miRNA:   3'- gCGCCGCuCGCaCGa--GCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 104135 0.71 0.362928
Target:  5'- aCGUGGCGGccgaccGCG-GCUaCGaCGCCGCGGa -3'
miRNA:   3'- -GCGCCGCU------CGCaCGA-GCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 53969 0.7 0.378291
Target:  5'- aGCGGCG-GCGg---CGCCuCCGCGGg -3'
miRNA:   3'- gCGCCGCuCGCacgaGCGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 82000 0.7 0.378291
Target:  5'- gGCGGCcaGGGCGgccGCgugCGCCGCCGacagcUGGg -3'
miRNA:   3'- gCGCCG--CUCGCa--CGa--GCGGCGGU-----GCC- -5'
29371 3' -62.9 NC_006151.1 + 69801 0.7 0.378291
Target:  5'- gGCGGCacaGGCGcuccaggcGCUCGCCGuCCACGu -3'
miRNA:   3'- gCGCCGc--UCGCa-------CGAGCGGC-GGUGCc -5'
29371 3' -62.9 NC_006151.1 + 48947 0.7 0.385346
Target:  5'- cCGCGcGCGAGgaCGUGUUCGCCuggacgcGCCucACGGc -3'
miRNA:   3'- -GCGC-CGCUC--GCACGAGCGG-------CGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 103739 0.7 0.386135
Target:  5'- cCGCuGGCGcGGCaGUGCgaggaGCgCGCCGCGGc -3'
miRNA:   3'- -GCG-CCGC-UCG-CACGag---CG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 102885 0.7 0.39169
Target:  5'- cCGCGGUG-GCGgGCcugCGCCGCCucgucgacucgcugGCGGc -3'
miRNA:   3'- -GCGCCGCuCGCaCGa--GCGGCGG--------------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.