miRNA display CGI


Results 61 - 80 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 5550 0.72 0.280063
Target:  5'- uCGCGGCG-GCGgGCUCGUCGagcaggggcUCGCGGu -3'
miRNA:   3'- -GCGCCGCuCGCaCGAGCGGC---------GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 2114 0.72 0.286355
Target:  5'- cCGCGGgGc-CG-GCcgUCGCCGCCGCGGa -3'
miRNA:   3'- -GCGCCgCucGCaCG--AGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 113646 0.72 0.286355
Target:  5'- gCGCGGCGAcGCGcUGCgcaaggcgcagaUCGCCGCCGa-- -3'
miRNA:   3'- -GCGCCGCU-CGC-ACG------------AGCGGCGGUgcc -5'
29371 3' -62.9 NC_006151.1 + 106796 0.72 0.286355
Target:  5'- cCGCGGCG-GCgGUGCUCGUCGgggccCCGCuGGu -3'
miRNA:   3'- -GCGCCGCuCG-CACGAGCGGC-----GGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 118878 0.72 0.286355
Target:  5'- aGCGGCGGcGCGgcgGCgacgCgGCCGCCgGCGGc -3'
miRNA:   3'- gCGCCGCU-CGCa--CGa---G-CGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 124067 0.72 0.292758
Target:  5'- gCGCGGaCGGcCGUGCgCGCgGCCGCGa -3'
miRNA:   3'- -GCGCC-GCUcGCACGaGCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 29589 0.72 0.292758
Target:  5'- uCGCGGCGGcuGCG-GC-CGCgGCgGCGGg -3'
miRNA:   3'- -GCGCCGCU--CGCaCGaGCGgCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 135166 0.72 0.299272
Target:  5'- gCGCGGCccggacGGGCGccgGCU-GCCGCCGcCGGg -3'
miRNA:   3'- -GCGCCG------CUCGCa--CGAgCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 90671 0.72 0.299272
Target:  5'- gGCGGCGGGCc-GCUUGucccCCGCgGCGGg -3'
miRNA:   3'- gCGCCGCUCGcaCGAGC----GGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 3247 0.72 0.299272
Target:  5'- gCGCGGCG-GCGgaGCggggCGCCGCgGCGc -3'
miRNA:   3'- -GCGCCGCuCGCa-CGa---GCGGCGgUGCc -5'
29371 3' -62.9 NC_006151.1 + 57102 0.72 0.299272
Target:  5'- gCGCcGCGAGCa-GCgcgCGCCGCCGCGc -3'
miRNA:   3'- -GCGcCGCUCGcaCGa--GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 3408 0.72 0.299272
Target:  5'- cCGCGGCGuGUGgGuCUCGCCGgC-CGGg -3'
miRNA:   3'- -GCGCCGCuCGCaC-GAGCGGCgGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 141642 0.72 0.305898
Target:  5'- cCGCGGCGGcGCG-GCgggGCC-CCGCGGg -3'
miRNA:   3'- -GCGCCGCU-CGCaCGag-CGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 130350 0.72 0.305898
Target:  5'- cCGCGGCGucGUGguugacgGCcgCGCgCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCu-CGCa------CGa-GCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 65783 0.72 0.305898
Target:  5'- gGCGGCG-GCGaUGg-CGCCGCCcggcGCGGa -3'
miRNA:   3'- gCGCCGCuCGC-ACgaGCGGCGG----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 106350 0.72 0.305898
Target:  5'- aCGCGGUGGacacgcuggacGCGgGCgcgCGcCCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCU-----------CGCaCGa--GC-GGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 119051 0.72 0.305898
Target:  5'- gGCGGCGccGCG-GC-CGCCuCCGCGGg -3'
miRNA:   3'- gCGCCGCu-CGCaCGaGCGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 67984 0.72 0.312636
Target:  5'- uCGCGGCG-GCccGCcggCGCCgcgGCCACGGg -3'
miRNA:   3'- -GCGCCGCuCGcaCGa--GCGG---CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 100668 0.72 0.312636
Target:  5'- gCGCGGCGuGCuggcGCUCGUCGCgACGc -3'
miRNA:   3'- -GCGCCGCuCGca--CGAGCGGCGgUGCc -5'
29371 3' -62.9 NC_006151.1 + 115177 0.72 0.312636
Target:  5'- gCGCGGCaGGGgGcGCUCcagccaGCgCGCCGCGGg -3'
miRNA:   3'- -GCGCCG-CUCgCaCGAG------CG-GCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.