miRNA display CGI


Results 81 - 100 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 69629 0.72 0.319486
Target:  5'- uCGCGGuCGGcgucccgcGCGUGCggCGCCGCCG-GGu -3'
miRNA:   3'- -GCGCC-GCU--------CGCACGa-GCGGCGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 68019 0.72 0.319486
Target:  5'- gGCGGCGuccagguccaGGCG-GCcCGCCGgCGCGGc -3'
miRNA:   3'- gCGCCGC----------UCGCaCGaGCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 85330 0.72 0.319486
Target:  5'- gCGCuggagGGCcacAGCGUGCUCGCCGCgCugGc -3'
miRNA:   3'- -GCG-----CCGc--UCGCACGAGCGGCG-GugCc -5'
29371 3' -62.9 NC_006151.1 + 130887 0.72 0.319486
Target:  5'- gGCGGCGguggaGGCGgcgGCcgUCGCCGUCGuCGGu -3'
miRNA:   3'- gCGCCGC-----UCGCa--CG--AGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 135917 0.72 0.319486
Target:  5'- -cCGGCGGuCGUGCgcgCGCUcuGCCGCGGg -3'
miRNA:   3'- gcGCCGCUcGCACGa--GCGG--CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 101481 0.71 0.325746
Target:  5'- cCGCGGCGAcGuCGUGUaCGUCuucgacccgcacgGCCACGGg -3'
miRNA:   3'- -GCGCCGCU-C-GCACGaGCGG-------------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 55466 0.71 0.326447
Target:  5'- cCGcCGGgGGGCGcGCgccCGgCGCCGCGGa -3'
miRNA:   3'- -GC-GCCgCUCGCaCGa--GCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 86081 0.71 0.326447
Target:  5'- cCGCGcGCGcGCc-GC-CGCCGCCAUGGg -3'
miRNA:   3'- -GCGC-CGCuCGcaCGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 131006 0.71 0.326447
Target:  5'- gGCGGUaGAGCGUGC-CGgCGUaGCGGg -3'
miRNA:   3'- gCGCCG-CUCGCACGaGCgGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 62275 0.71 0.326447
Target:  5'- aCGcCGGCcuucuGCGUGCUCGUgGCCagcGCGGc -3'
miRNA:   3'- -GC-GCCGcu---CGCACGAGCGgCGG---UGCC- -5'
29371 3' -62.9 NC_006151.1 + 64614 0.71 0.333521
Target:  5'- aGCGGCGc-CGcGC-CGCCgGCCGCGGg -3'
miRNA:   3'- gCGCCGCucGCaCGaGCGG-CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 118947 0.71 0.333521
Target:  5'- aCGCGGCGcugucgcuggaGGC--GCUCGUCGCCGcCGGc -3'
miRNA:   3'- -GCGCCGC-----------UCGcaCGAGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 1837 0.71 0.333521
Target:  5'- cCGCcgGGcCGAGgGgaccgagGC-CGCCGCCGCGGa -3'
miRNA:   3'- -GCG--CC-GCUCgCa------CGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 64466 0.71 0.333521
Target:  5'- gGCGGC--GCGcGC-CGCCGCgGCGGg -3'
miRNA:   3'- gCGCCGcuCGCaCGaGCGGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 4795 0.71 0.333521
Target:  5'- cCGCGGCGcgguAGCGgGC-CGCgGCCugGCGGa -3'
miRNA:   3'- -GCGCCGC----UCGCaCGaGCGgCGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 68264 0.71 0.333521
Target:  5'- gCGCGGCGA-CGgucGCggCGCCgggcGCCACGGc -3'
miRNA:   3'- -GCGCCGCUcGCa--CGa-GCGG----CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 136993 0.71 0.333521
Target:  5'- gGCGGCGGGCGcGCgCGCaCGgCGCuGGg -3'
miRNA:   3'- gCGCCGCUCGCaCGaGCG-GCgGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 87183 0.71 0.339982
Target:  5'- cCGCGGCGccgccgcAGC-UGCU-GCCGCC-CGGg -3'
miRNA:   3'- -GCGCCGC-------UCGcACGAgCGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 84921 0.71 0.340706
Target:  5'- gCGCGGCGccgccuccGGCGUGCUCuUCGgCACGu -3'
miRNA:   3'- -GCGCCGC--------UCGCACGAGcGGCgGUGCc -5'
29371 3' -62.9 NC_006151.1 + 131739 0.71 0.340706
Target:  5'- gGUGGCGGGCccggGCgaggCGaCCGUCGCGGu -3'
miRNA:   3'- gCGCCGCUCGca--CGa---GC-GGCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.