Results 101 - 120 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 84780 | 0.71 | 0.345802 |
Target: 5'- aCGCGGCGcgcgccgccgaggaGGCGcccgagGCgacCGCgGCCGCGGa -3' miRNA: 3'- -GCGCCGC--------------UCGCa-----CGa--GCGgCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 92182 | 0.71 | 0.348003 |
Target: 5'- cCGaCGGCGAcGgGgccGCcgacgCGCCGCCGCGGc -3' miRNA: 3'- -GC-GCCGCU-CgCa--CGa----GCGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 68143 | 0.71 | 0.348003 |
Target: 5'- cCGCGG--AGCGUGgUCGUgGUCACGGc -3' miRNA: 3'- -GCGCCgcUCGCACgAGCGgCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 113081 | 0.71 | 0.348003 |
Target: 5'- aGCGcGCGGcCGUcGC-CGCCGCCACcGGg -3' miRNA: 3'- gCGC-CGCUcGCA-CGaGCGGCGGUG-CC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 97627 | 0.71 | 0.354664 |
Target: 5'- aGCGGCGcGCGgccaugucguuggUGCgCGCCGCCuccuggucgccGCGGg -3' miRNA: 3'- gCGCCGCuCGC-------------ACGaGCGGCGG-----------UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 126034 | 0.71 | 0.35541 |
Target: 5'- -uCGGCGA-CGUGggCGCCGCCGuCGGc -3' miRNA: 3'- gcGCCGCUcGCACgaGCGGCGGU-GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 112970 | 0.71 | 0.35541 |
Target: 5'- cCGUGGCGGacGCGcGCgCGCCGCCGagccUGGg -3' miRNA: 3'- -GCGCCGCU--CGCaCGaGCGGCGGU----GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 58445 | 0.71 | 0.35541 |
Target: 5'- gGUGGCGuGCGcGCgcgCGgCGUCGCGGu -3' miRNA: 3'- gCGCCGCuCGCaCGa--GCgGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 25387 | 0.71 | 0.35541 |
Target: 5'- gGCGGCG-GUGguuCUCGaCCGCgACGGg -3' miRNA: 3'- gCGCCGCuCGCac-GAGC-GGCGgUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 104135 | 0.71 | 0.362928 |
Target: 5'- aCGUGGCGGccgaccGCG-GCUaCGaCGCCGCGGa -3' miRNA: 3'- -GCGCCGCU------CGCaCGA-GCgGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 125877 | 0.71 | 0.362928 |
Target: 5'- aCGC-GCGAG-GaGCUCGCCGaCACGGg -3' miRNA: 3'- -GCGcCGCUCgCaCGAGCGGCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 31589 | 0.71 | 0.362928 |
Target: 5'- gGCGGCGcGCuccgcGCUccccCGCCGCCugGGc -3' miRNA: 3'- gCGCCGCuCGca---CGA----GCGGCGGugCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 91085 | 0.71 | 0.362928 |
Target: 5'- cCGCgGGCGAGCGcgaaGgUCGUCccgGCCGCGGc -3' miRNA: 3'- -GCG-CCGCUCGCa---CgAGCGG---CGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 29039 | 0.71 | 0.363686 |
Target: 5'- aCGCuGGC-AGCGUGCcaagacucgaguuggCGgCGCCGCGGg -3' miRNA: 3'- -GCG-CCGcUCGCACGa--------------GCgGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 66547 | 0.7 | 0.370555 |
Target: 5'- gGgGGCGcGCGcgGCcgCGCCGCCGUGGa -3' miRNA: 3'- gCgCCGCuCGCa-CGa-GCGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 106656 | 0.7 | 0.370555 |
Target: 5'- cCGCGGCGcaCGUGCgCGagGCCGCGGc -3' miRNA: 3'- -GCGCCGCucGCACGaGCggCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 35230 | 0.7 | 0.370555 |
Target: 5'- cCG-GGCGAGCcgagaUgGCCGCCGCGGg -3' miRNA: 3'- -GCgCCGCUCGcacg-AgCGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 57046 | 0.7 | 0.373637 |
Target: 5'- aGCGGgGGGCGcagcUGCUCGUagggcaccgggccggCGCCGCGc -3' miRNA: 3'- gCGCCgCUCGC----ACGAGCG---------------GCGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 69801 | 0.7 | 0.378291 |
Target: 5'- gGCGGCacaGGCGcuccaggcGCUCGCCGuCCACGu -3' miRNA: 3'- gCGCCGc--UCGCa-------CGAGCGGC-GGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 53969 | 0.7 | 0.378291 |
Target: 5'- aGCGGCG-GCGg---CGCCuCCGCGGg -3' miRNA: 3'- gCGCCGCuCGCacgaGCGGcGGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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