miRNA display CGI


Results 121 - 140 of 363 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 82000 0.7 0.378291
Target:  5'- gGCGGCcaGGGCGgccGCgugCGCCGCCGacagcUGGg -3'
miRNA:   3'- gCGCCG--CUCGCa--CGa--GCGGCGGU-----GCC- -5'
29371 3' -62.9 NC_006151.1 + 53969 0.7 0.378291
Target:  5'- aGCGGCG-GCGg---CGCCuCCGCGGg -3'
miRNA:   3'- gCGCCGCuCGCacgaGCGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 48947 0.7 0.385346
Target:  5'- cCGCGcGCGAGgaCGUGUUCGCCuggacgcGCCucACGGc -3'
miRNA:   3'- -GCGC-CGCUC--GCACGAGCGG-------CGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 54926 0.7 0.386135
Target:  5'- -aCGGCGAG-GUGCUgGCgUGCCACGc -3'
miRNA:   3'- gcGCCGCUCgCACGAgCG-GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 103739 0.7 0.386135
Target:  5'- cCGCuGGCGcGGCaGUGCgaggaGCgCGCCGCGGc -3'
miRNA:   3'- -GCG-CCGC-UCG-CACGag---CG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 123912 0.7 0.386135
Target:  5'- gCGCGGCGGcCGUgacGCggGCCGCCuCGGc -3'
miRNA:   3'- -GCGCCGCUcGCA---CGagCGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 102885 0.7 0.39169
Target:  5'- cCGCGGUG-GCGgGCcugCGCCGCCucgucgacucgcugGCGGc -3'
miRNA:   3'- -GCGCCGCuCGCaCGa--GCGGCGG--------------UGCC- -5'
29371 3' -62.9 NC_006151.1 + 131120 0.7 0.394086
Target:  5'- cCGCGGCGcGgGagGCcgCGgCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCuCgCa-CGa-GCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 113519 0.7 0.394086
Target:  5'- uCGUGGCGGacGCGcGCUuccuggcgcugaUGCgCGCCGCGGg -3'
miRNA:   3'- -GCGCCGCU--CGCaCGA------------GCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 119455 0.7 0.394086
Target:  5'- cCGCGGCGA-CGUGgaCGCCgugcGCUACGu -3'
miRNA:   3'- -GCGCCGCUcGCACgaGCGG----CGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 122490 0.7 0.394086
Target:  5'- aCGCgGGCGAGaCG-GCgCGCCGgCgCGCGGa -3'
miRNA:   3'- -GCG-CCGCUC-GCaCGaGCGGC-G-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 6232 0.7 0.394086
Target:  5'- cCGCGGCgccggGAGCccugGCU-GCCGCCGuCGGg -3'
miRNA:   3'- -GCGCCG-----CUCGca--CGAgCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 18702 0.7 0.394086
Target:  5'- gGCGGCGccGGCGUcGUgaCGCCGuCCACGu -3'
miRNA:   3'- gCGCCGC--UCGCA-CGa-GCGGC-GGUGCc -5'
29371 3' -62.9 NC_006151.1 + 56077 0.7 0.402142
Target:  5'- aGCGGCGAGaCGguguccUGCgacgaguacCGCCGCCGCu- -3'
miRNA:   3'- gCGCCGCUC-GC------ACGa--------GCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 75624 0.7 0.402142
Target:  5'- gCGCGcCGAGCccacggGCUUGCCGUCGuCGGg -3'
miRNA:   3'- -GCGCcGCUCGca----CGAGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 39007 0.7 0.402142
Target:  5'- cCGCGGCGcccc-GCUcCGCCGCCGCGc -3'
miRNA:   3'- -GCGCCGCucgcaCGA-GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 10620 0.7 0.402142
Target:  5'- cCGCGcGCccGCGUGCgcucgUGCCGgCGCGGc -3'
miRNA:   3'- -GCGC-CGcuCGCACGa----GCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 96391 0.7 0.402142
Target:  5'- gCGCGGUGccGGCGcacgGCggcCGCCaCCGCGGg -3'
miRNA:   3'- -GCGCCGC--UCGCa---CGa--GCGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 69323 0.7 0.409481
Target:  5'- aCGUGcGCGGGCGcG-UCGCCGCCcgcgagcGCGGc -3'
miRNA:   3'- -GCGC-CGCUCGCaCgAGCGGCGG-------UGCC- -5'
29371 3' -62.9 NC_006151.1 + 68944 0.7 0.410301
Target:  5'- -cUGGCGcauGCGcgGCUCGCgGCgCACGGa -3'
miRNA:   3'- gcGCCGCu--CGCa-CGAGCGgCG-GUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.