miRNA display CGI


Results 141 - 160 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 136638 0.69 0.418563
Target:  5'- cCGCGGCGcccGUGgggcGCUCGCC-CCuCGGg -3'
miRNA:   3'- -GCGCCGCu--CGCa---CGAGCGGcGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 120790 0.69 0.418563
Target:  5'- aCGCGGcCGAcGCGgaGCgCGCCGCgCGCGa -3'
miRNA:   3'- -GCGCC-GCU-CGCa-CGaGCGGCG-GUGCc -5'
29371 3' -62.9 NC_006151.1 + 61439 0.69 0.418563
Target:  5'- cCGCGGCGcccGCccGCgucCGCCGCCauguGCGGg -3'
miRNA:   3'- -GCGCCGCu--CGcaCGa--GCGGCGG----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 96559 0.69 0.418563
Target:  5'- -aCGGCGcGCGUGauaaacagCGCCGCCucGCGGc -3'
miRNA:   3'- gcGCCGCuCGCACga------GCGGCGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 92678 0.69 0.418563
Target:  5'- gGCGGCcgggGAcGCGcGCUCGCCGCgCGCc- -3'
miRNA:   3'- gCGCCG----CU-CGCaCGAGCGGCG-GUGcc -5'
29371 3' -62.9 NC_006151.1 + 3971 0.69 0.418563
Target:  5'- gCGCGGCGgccucGGCGagccgGC-CGCgGCCACGu -3'
miRNA:   3'- -GCGCCGC-----UCGCa----CGaGCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 30616 0.69 0.418563
Target:  5'- gGCGGUcGGCGUGCgCGCUG-UGCGGg -3'
miRNA:   3'- gCGCCGcUCGCACGaGCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 140282 0.69 0.426925
Target:  5'- cCGuCGaCGAGCucGUGCgccggCGCCGCCuGCGGg -3'
miRNA:   3'- -GC-GCcGCUCG--CACGa----GCGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 127990 0.69 0.426925
Target:  5'- uGCGGCG-GCuccGCgUCGCgGUCGCGGg -3'
miRNA:   3'- gCGCCGCuCGca-CG-AGCGgCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 60186 0.69 0.426925
Target:  5'- aCGUGGUucagcagcacGGGCGUgaagauggGCUCGCCGCgCGCGc -3'
miRNA:   3'- -GCGCCG----------CUCGCA--------CGAGCGGCG-GUGCc -5'
29371 3' -62.9 NC_006151.1 + 39949 0.69 0.426925
Target:  5'- cCGCuGGUgcugaccccGGGCGccgUCGCCGCCGCGGg -3'
miRNA:   3'- -GCG-CCG---------CUCGCacgAGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 7024 0.69 0.426925
Target:  5'- cCGCGGCG-GCcaucucgGCUCGCCcggGCCAaUGGg -3'
miRNA:   3'- -GCGCCGCuCGca-----CGAGCGG---CGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 5617 0.69 0.426925
Target:  5'- gGCGGaGGGgGcGC-CGCCGCCGcCGGg -3'
miRNA:   3'- gCGCCgCUCgCaCGaGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 86317 0.69 0.426925
Target:  5'- aGCuGgGGGcCGUGCUCGCCcgcGCCGUGGg -3'
miRNA:   3'- gCGcCgCUC-GCACGAGCGG---CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 137664 0.69 0.434535
Target:  5'- gGCGGaCGAGCGcccgccgUGCg-GCUGCCGCGc -3'
miRNA:   3'- gCGCC-GCUCGC-------ACGagCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 115655 0.69 0.435385
Target:  5'- uCGCGGCcgauGGuCGUcacGgUgGCCGCCACGGg -3'
miRNA:   3'- -GCGCCGc---UC-GCA---CgAgCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 17473 0.69 0.435385
Target:  5'- cCGCGGCGuguccucgucGGCG-GCgCGCCGCUGCu- -3'
miRNA:   3'- -GCGCCGC----------UCGCaCGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 85157 0.69 0.435385
Target:  5'- uGCGGCaGGgG-GC-CGgCGCCGCGGg -3'
miRNA:   3'- gCGCCGcUCgCaCGaGCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 78526 0.69 0.435385
Target:  5'- uCGCGGacccGGCGgggGcCUCGCCGCCgACGa -3'
miRNA:   3'- -GCGCCgc--UCGCa--C-GAGCGGCGG-UGCc -5'
29371 3' -62.9 NC_006151.1 + 121930 0.69 0.435385
Target:  5'- cCGCGuGCuGGGgGcGCUgGCCGCCGcCGGc -3'
miRNA:   3'- -GCGC-CG-CUCgCaCGAgCGGCGGU-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.