Results 81 - 100 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 5339 | 0.67 | 0.572107 |
Target: 5'- cCGCGGCGgagGGCGccCUCuCCGgCGCGGc -3' miRNA: 3'- -GCGCCGC---UCGCacGAGcGGCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 11329 | 0.67 | 0.572107 |
Target: 5'- cCGC-GCGGGCGauaccgcGCggGCCGCCcGCGGg -3' miRNA: 3'- -GCGcCGCUCGCa------CGagCGGCGG-UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 105676 | 0.67 | 0.572107 |
Target: 5'- aCGCGGCcuacGGCGgcgcgggGCcgaCGCCGgCGCGGc -3' miRNA: 3'- -GCGCCGc---UCGCa------CGa--GCGGCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 123032 | 0.67 | 0.572107 |
Target: 5'- cCGUGGCGugGGCGgaccUGCCGgCCGCGGc -3' miRNA: 3'- -GCGCCGC--UCGCacgaGCGGC-GGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 46950 | 0.67 | 0.57115 |
Target: 5'- cCGCGGacugGGGCGacccuguugcugcUGCggcCGCCGCCGCu- -3' miRNA: 3'- -GCGCCg---CUCGC-------------ACGa--GCGGCGGUGcc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 134174 | 0.67 | 0.563505 |
Target: 5'- gGUGGCGcugcccaccggauacGCGaUGCUCGUCGCgcagCGCGGg -3' miRNA: 3'- gCGCCGCu--------------CGC-ACGAGCGGCG----GUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 36693 | 0.67 | 0.562551 |
Target: 5'- aGCaccGCGAGCcccUGCUcgacgagccCGCCGCCGCGa -3' miRNA: 3'- gCGc--CGCUCGc--ACGA---------GCGGCGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 36020 | 0.67 | 0.562551 |
Target: 5'- gGCGGC-AGCcaggGCUccCGgCGCCGCGGc -3' miRNA: 3'- gCGCCGcUCGca--CGA--GCgGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 79092 | 0.67 | 0.562551 |
Target: 5'- gCGCGcGCGAGCGaGCgccccucCGUCguggcuggGCCACGGc -3' miRNA: 3'- -GCGC-CGCUCGCaCGa------GCGG--------CGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 117579 | 0.67 | 0.562551 |
Target: 5'- cCGCGGagGAugggccGCGUGg-CGCCGCCGCa- -3' miRNA: 3'- -GCGCCg-CU------CGCACgaGCGGCGGUGcc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 61644 | 0.67 | 0.562551 |
Target: 5'- -cCGGCG-GCGUGUggacgCGCCaGCCGCu- -3' miRNA: 3'- gcGCCGCuCGCACGa----GCGG-CGGUGcc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 121782 | 0.67 | 0.562551 |
Target: 5'- cCGCGGUGGuGCGcgaGCUgGCC-CCACGc -3' miRNA: 3'- -GCGCCGCU-CGCa--CGAgCGGcGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 63752 | 0.67 | 0.561598 |
Target: 5'- gCGuCGGCGGgGCGUcCUCGgCGCCcccgcgucgccagGCGGg -3' miRNA: 3'- -GC-GCCGCU-CGCAcGAGCgGCGG-------------UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 127330 | 0.67 | 0.556838 |
Target: 5'- cCGCgGGCGGGgGUGCUgGUacacguggucggucuCGCCcuggGCGGg -3' miRNA: 3'- -GCG-CCGCUCgCACGAgCG---------------GCGG----UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 141402 | 0.67 | 0.553038 |
Target: 5'- aGCGGCGuGUccggcgaucgGUGCgggCGCgGCC-CGGc -3' miRNA: 3'- gCGCCGCuCG----------CACGa--GCGgCGGuGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 2545 | 0.67 | 0.553038 |
Target: 5'- gCGCuGGCGGGCcauguccuUGCa-GCCGuCCACGGu -3' miRNA: 3'- -GCG-CCGCUCGc-------ACGagCGGC-GGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 38275 | 0.67 | 0.553038 |
Target: 5'- aCGUGGCc-GCGgcccgGCUCgccgagGCCGCCGCGcGg -3' miRNA: 3'- -GCGCCGcuCGCa----CGAG------CGGCGGUGC-C- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 123853 | 0.67 | 0.553038 |
Target: 5'- gCGgGGCGccgucgcgcuAGCGcUGCUgcugcuggCGCuCGCCGCGGc -3' miRNA: 3'- -GCgCCGC----------UCGC-ACGA--------GCG-GCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 56294 | 0.67 | 0.553038 |
Target: 5'- cCGCGGCGgaGGCGga--CGCCG-CGCGGu -3' miRNA: 3'- -GCGCCGC--UCGCacgaGCGGCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 88911 | 0.67 | 0.553038 |
Target: 5'- gCGUcgGGCGAGCGgaagCGcCCGCgGCGGu -3' miRNA: 3'- -GCG--CCGCUCGCacgaGC-GGCGgUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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