miRNA display CGI


Results 101 - 120 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 56294 0.67 0.553038
Target:  5'- cCGCGGCGgaGGCGga--CGCCG-CGCGGu -3'
miRNA:   3'- -GCGCCGC--UCGCacgaGCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 117547 0.67 0.553038
Target:  5'- aCGCGGCGA-CGcGC-CGCgGCCAgaaGGg -3'
miRNA:   3'- -GCGCCGCUcGCaCGaGCGgCGGUg--CC- -5'
29371 3' -62.9 NC_006151.1 + 84433 0.67 0.552089
Target:  5'- gCGCGGCG-GCGcGCg-GCCcauguccccccgcGCCAUGGa -3'
miRNA:   3'- -GCGCCGCuCGCaCGagCGG-------------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 49487 0.67 0.552089
Target:  5'- gCGUGGacugaguCGGGCGUGCgCGCacacCGCCgGCGGa -3'
miRNA:   3'- -GCGCC-------GCUCGCACGaGCG----GCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 102480 0.67 0.552089
Target:  5'- gCGCaGCucucGGCGUGCUucauggaCGCCGCggCGCGGg -3'
miRNA:   3'- -GCGcCGc---UCGCACGA-------GCGGCG--GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 10467 0.67 0.551141
Target:  5'- aCGCGGCG-GCG-GUgaaggaggagaGCCGCC-CGGc -3'
miRNA:   3'- -GCGCCGCuCGCaCGag---------CGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 140067 0.67 0.543574
Target:  5'- gGCGGCGcGCGUGCUCcgcgagaugguGCUccugaacgaggGCCugACGGa -3'
miRNA:   3'- gCGCCGCuCGCACGAG-----------CGG-----------CGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 98206 0.67 0.543574
Target:  5'- gCGCGGgguCGAGUGcGCggcggCGcCCGCgCGCGGa -3'
miRNA:   3'- -GCGCC---GCUCGCaCGa----GC-GGCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 3575 0.67 0.543574
Target:  5'- aGCGGCGcuuGCGccgggGCccccgguccucuUCGUCGUCGCGGu -3'
miRNA:   3'- gCGCCGCu--CGCa----CG------------AGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 19301 0.67 0.543574
Target:  5'- aGCGGCGcgGGCGgccGgUCGCCcaccGCCACa- -3'
miRNA:   3'- gCGCCGC--UCGCa--CgAGCGG----CGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 49255 0.67 0.543574
Target:  5'- gCGCGGCu--CGUGCgCGCCGUCguccaGCGGc -3'
miRNA:   3'- -GCGCCGcucGCACGaGCGGCGG-----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 63421 0.67 0.543574
Target:  5'- gCGCaGGCGGGCG-GCaCGUCGCacaGCGa -3'
miRNA:   3'- -GCG-CCGCUCGCaCGaGCGGCGg--UGCc -5'
29371 3' -62.9 NC_006151.1 + 80341 0.67 0.543574
Target:  5'- cCGgGGCGAGgGcgGCUCuCCGCC-CGu -3'
miRNA:   3'- -GCgCCGCUCgCa-CGAGcGGCGGuGCc -5'
29371 3' -62.9 NC_006151.1 + 84207 0.67 0.543574
Target:  5'- gGCGGCGAGgagaucacgcuCGUGCcccugcugguguUCGUgGCCcaGCGGa -3'
miRNA:   3'- gCGCCGCUC-----------GCACG------------AGCGgCGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 86711 0.67 0.543574
Target:  5'- cCGCuGgGAGCugGUcGCggcgCGCCGCCGCGa -3'
miRNA:   3'- -GCGcCgCUCG--CA-CGa---GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 97464 0.67 0.543574
Target:  5'- aGCucgGGCaGGCG-GCUCaCCGCCACGu -3'
miRNA:   3'- gCG---CCGcUCGCaCGAGcGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 101553 0.67 0.543574
Target:  5'- gCGCccGGCGGaCGUGUacgCGCaCGUCGCGGg -3'
miRNA:   3'- -GCG--CCGCUcGCACGa--GCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 111119 0.67 0.543574
Target:  5'- gGCGGgGAGCGcgcgucugUGCgCGCCcCCGCGc -3'
miRNA:   3'- gCGCCgCUCGC--------ACGaGCGGcGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 139306 0.67 0.543574
Target:  5'- uGCGGCGcGUGcUGCUCGaCCGUgcuCGcCGGg -3'
miRNA:   3'- gCGCCGCuCGC-ACGAGC-GGCG---GU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 40140 0.67 0.534164
Target:  5'- cCGCGGCG-GCGacgGC-CgGCC-CCGCGGc -3'
miRNA:   3'- -GCGCCGCuCGCa--CGaG-CGGcGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.