miRNA display CGI


Results 81 - 100 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 49255 0.67 0.543574
Target:  5'- gCGCGGCu--CGUGCgCGCCGUCguccaGCGGc -3'
miRNA:   3'- -GCGCCGcucGCACGaGCGGCGG-----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 49487 0.67 0.552089
Target:  5'- gCGUGGacugaguCGGGCGUGCgCGCacacCGCCgGCGGa -3'
miRNA:   3'- -GCGCC-------GCUCGCACGaGCG----GCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 50090 0.68 0.524812
Target:  5'- aCGCGGCGcGCGUacgcgaucaGCUC-CgGuCCGCGGu -3'
miRNA:   3'- -GCGCCGCuCGCA---------CGAGcGgC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 50167 0.66 0.600982
Target:  5'- aGCGGaCGAGCGcgGC-CgGCCGCgC-CGGu -3'
miRNA:   3'- gCGCC-GCUCGCa-CGaG-CGGCG-GuGCC- -5'
29371 3' -62.9 NC_006151.1 + 50621 0.79 0.108155
Target:  5'- cCGCGGC-AGCGUGCaCGCCucggcgacgGCCGCGGg -3'
miRNA:   3'- -GCGCCGcUCGCACGaGCGG---------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 50655 0.77 0.149287
Target:  5'- gGCGGaccCGAGuCGUGCgcggccgcacccccgCGCCGCCGCGGc -3'
miRNA:   3'- gCGCC---GCUC-GCACGa--------------GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 51597 0.67 0.553038
Target:  5'- gGaCGGCGGGUcaguacacgauGUGCaccgCGCCGUCGCGc -3'
miRNA:   3'- gC-GCCGCUCG-----------CACGa---GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 51995 0.69 0.443942
Target:  5'- cCGCGGUGccGGCGUgcaGCUUGC-GCCGCGc -3'
miRNA:   3'- -GCGCCGC--UCGCA---CGAGCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 52388 0.77 0.145347
Target:  5'- cCGCGG-GGGCG-GCgggCGCCGCCGCGc -3'
miRNA:   3'- -GCGCCgCUCGCaCGa--GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 52464 0.66 0.630042
Target:  5'- gGCGGCcaGGCGccgguagGC-CGCCGUgACGGc -3'
miRNA:   3'- gCGCCGc-UCGCa------CGaGCGGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 52817 0.66 0.620345
Target:  5'- uGCGGCcGGCGUugGC-CGCgaGCCAgCGGu -3'
miRNA:   3'- gCGCCGcUCGCA--CGaGCGg-CGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 53082 0.68 0.488074
Target:  5'- aCGaGGCGcAG-GUGCUCGuCCGUCAgCGGg -3'
miRNA:   3'- -GCgCCGC-UCgCACGAGC-GGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 53895 0.66 0.631012
Target:  5'- aCGCGGCGAagggcagcuccaGCGccucuauauccaccgGgUUGuCCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCU------------CGCa--------------CgAGC-GGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 53969 0.7 0.378291
Target:  5'- aGCGGCG-GCGg---CGCCuCCGCGGg -3'
miRNA:   3'- gCGCCGCuCGCacgaGCGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 54088 0.66 0.63974
Target:  5'- uGCGGCG-GCG-GCg-GCgGCCAUGu -3'
miRNA:   3'- gCGCCGCuCGCaCGagCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 54121 0.73 0.273881
Target:  5'- gGCGGCGGcuGCGgacggGCUCuGCCccggcggcGCCGCGGa -3'
miRNA:   3'- gCGCCGCU--CGCa----CGAG-CGG--------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 54847 0.68 0.49715
Target:  5'- gCGCGGgGAGUgccugGUGCUCuggcaGCCGCUGUGGc -3'
miRNA:   3'- -GCGCCgCUCG-----CACGAG-----CGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 54926 0.7 0.386135
Target:  5'- -aCGGCGAG-GUGCUgGCgUGCCACGc -3'
miRNA:   3'- gcGCCGCUCgCACGAgCG-GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 55397 0.66 0.600982
Target:  5'- uGCGGCGccuGCGcgagcaggcccUGCgCGCCGCgCagGCGGg -3'
miRNA:   3'- gCGCCGCu--CGC-----------ACGaGCGGCG-G--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 55466 0.71 0.326447
Target:  5'- cCGcCGGgGGGCGcGCgccCGgCGCCGCGGa -3'
miRNA:   3'- -GC-GCCgCUCGCaCGa--GCgGCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.