miRNA display CGI


Results 101 - 120 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 55966 0.68 0.49715
Target:  5'- cCGCGGCuGGUGUGCgaggugCGCgaggUGCC-CGGg -3'
miRNA:   3'- -GCGCCGcUCGCACGa-----GCG----GCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 56077 0.7 0.402142
Target:  5'- aGCGGCGAGaCGguguccUGCgacgaguacCGCCGCCGCu- -3'
miRNA:   3'- gCGCCGCUC-GC------ACGa--------GCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 56294 0.67 0.553038
Target:  5'- cCGCGGCGgaGGCGga--CGCCG-CGCGGu -3'
miRNA:   3'- -GCGCCGC--UCGCacgaGCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 56336 0.68 0.479077
Target:  5'- gGUGGCugGAGCGcGCgcgcgcccCGCCGgCGCGGa -3'
miRNA:   3'- gCGCCG--CUCGCaCGa-------GCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 56564 0.66 0.630042
Target:  5'- uGCcgGGCGA-CGcGC-CGCCGCCcgACGGg -3'
miRNA:   3'- gCG--CCGCUcGCaCGaGCGGCGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 57046 0.7 0.373637
Target:  5'- aGCGGgGGGCGcagcUGCUCGUagggcaccgggccggCGCCGCGc -3'
miRNA:   3'- gCGCCgCUCGC----ACGAGCG---------------GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 57102 0.72 0.299272
Target:  5'- gCGCcGCGAGCa-GCgcgCGCCGCCGCGc -3'
miRNA:   3'- -GCGcCGCUCGcaCGa--GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 57237 0.66 0.600982
Target:  5'- gGCGGCGcGCGcgGcCUCGgCGuCCGCGcGg -3'
miRNA:   3'- gCGCCGCuCGCa-C-GAGCgGC-GGUGC-C- -5'
29371 3' -62.9 NC_006151.1 + 57446 0.74 0.241273
Target:  5'- uCGCGGCG-GCccccgcgucggccagGUGCcgCGCCGCgGCGGc -3'
miRNA:   3'- -GCGCCGCuCG---------------CACGa-GCGGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 57515 0.75 0.189334
Target:  5'- cCGCGGCG-GCGgcgGC-CGCCuccggcgcgGCCGCGGg -3'
miRNA:   3'- -GCGCCGCuCGCa--CGaGCGG---------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 57983 0.76 0.166437
Target:  5'- gGCGGCGAGCGcgccGCggaccgccuccggCGCgGCCGCGGc -3'
miRNA:   3'- gCGCCGCUCGCa---CGa------------GCGgCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 58122 0.66 0.620345
Target:  5'- gGCGGgGucGCGUcGCccgCGCCGUaCGCGGc -3'
miRNA:   3'- gCGCCgCu-CGCA-CGa--GCGGCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 58226 0.73 0.26781
Target:  5'- gCGCGGgaCGAGCacGCgCGCCGCCACGc -3'
miRNA:   3'- -GCGCC--GCUCGcaCGaGCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 58323 0.66 0.637801
Target:  5'- aGCGGCGGcgcgccggccuccGCGUaggcgcgcgcgaaGCUgGuCCGCCGCGu -3'
miRNA:   3'- gCGCCGCU-------------CGCA-------------CGAgC-GGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 58415 0.66 0.620345
Target:  5'- gCGCaGCuGGGCGUGCg-GCaGCCACGc -3'
miRNA:   3'- -GCGcCG-CUCGCACGagCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 58445 0.71 0.35541
Target:  5'- gGUGGCGuGCGcGCgcgCGgCGUCGCGGu -3'
miRNA:   3'- gCGCCGCuCGCaCGa--GCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 59003 0.69 0.443942
Target:  5'- gCGCGGCGuccAGCG-GCgcgucgaaGCCGCCcUGGg -3'
miRNA:   3'- -GCGCCGC---UCGCaCGag------CGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 59425 0.74 0.212462
Target:  5'- aGCGGCGccagcucGGCGUcggccGC-CGCCGCCGCGa -3'
miRNA:   3'- gCGCCGC-------UCGCA-----CGaGCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 60186 0.69 0.426925
Target:  5'- aCGUGGUucagcagcacGGGCGUgaagauggGCUCGCCGCgCGCGc -3'
miRNA:   3'- -GCGCCG----------CUCGCA--------CGAGCGGCG-GUGCc -5'
29371 3' -62.9 NC_006151.1 + 61439 0.69 0.418563
Target:  5'- cCGCGGCGcccGCccGCgucCGCCGCCauguGCGGg -3'
miRNA:   3'- -GCGCCGCu--CGcaCGa--GCGGCGG----UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.