miRNA display CGI


Results 121 - 140 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 61644 0.67 0.562551
Target:  5'- -cCGGCG-GCGUGUggacgCGCCaGCCGCu- -3'
miRNA:   3'- gcGCCGCuCGCACGa----GCGG-CGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 61922 0.69 0.461333
Target:  5'- aGCaGGCGGGUcugGC-CGCCGCCGCc- -3'
miRNA:   3'- gCG-CCGCUCGca-CGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 62005 0.69 0.443942
Target:  5'- aCG-GGUGA-CGUGCgCGCCGCCcugGCGGc -3'
miRNA:   3'- -GCgCCGCUcGCACGaGCGGCGG---UGCC- -5'
29371 3' -62.9 NC_006151.1 + 62275 0.71 0.326447
Target:  5'- aCGcCGGCcuucuGCGUGCUCGUgGCCagcGCGGc -3'
miRNA:   3'- -GC-GCCGcu---CGCACGAGCGgCGG---UGCC- -5'
29371 3' -62.9 NC_006151.1 + 62767 0.66 0.620345
Target:  5'- uGCGGCccGUGUGCcauuccaucUCGCCccaccCCACGGc -3'
miRNA:   3'- gCGCCGcuCGCACG---------AGCGGc----GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 63164 0.73 0.26781
Target:  5'- aCGCGGUacggggccuugGGGCGcacggggccggGCUCGCCGaCCAUGGg -3'
miRNA:   3'- -GCGCCG-----------CUCGCa----------CGAGCGGC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 63421 0.67 0.543574
Target:  5'- gCGCaGGCGGGCG-GCaCGUCGCacaGCGa -3'
miRNA:   3'- -GCG-CCGCUCGCaCGaGCGGCGg--UGCc -5'
29371 3' -62.9 NC_006151.1 + 63752 0.67 0.561598
Target:  5'- gCGuCGGCGGgGCGUcCUCGgCGCCcccgcgucgccagGCGGg -3'
miRNA:   3'- -GC-GCCGCU-CGCAcGAGCgGCGG-------------UGCC- -5'
29371 3' -62.9 NC_006151.1 + 64466 0.71 0.333521
Target:  5'- gGCGGC--GCGcGC-CGCCGCgGCGGg -3'
miRNA:   3'- gCGCCGcuCGCaCGaGCGGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 64506 0.8 0.08633
Target:  5'- gGCGGCGGGCGcGCgccgccaaagGCCGCCGCGGc -3'
miRNA:   3'- gCGCCGCUCGCaCGag--------CGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 64614 0.71 0.333521
Target:  5'- aGCGGCGc-CGcGC-CGCCgGCCGCGGg -3'
miRNA:   3'- gCGCCGCucGCaCGaGCGG-CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 65783 0.72 0.305898
Target:  5'- gGCGGCG-GCGaUGg-CGCCGCCcggcGCGGa -3'
miRNA:   3'- gCGCCGCuCGC-ACgaGCGGCGG----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 65960 0.68 0.49715
Target:  5'- gCGCGGCcgcgucgucGAGCcgGUcCUCGCCGgCCGCGa -3'
miRNA:   3'- -GCGCCG---------CUCG--CAcGAGCGGC-GGUGCc -5'
29371 3' -62.9 NC_006151.1 + 66547 0.7 0.370555
Target:  5'- gGgGGCGcGCGcgGCcgCGCCGCCGUGGa -3'
miRNA:   3'- gCgCCGCuCGCa-CGa-GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 66590 0.66 0.610656
Target:  5'- gCGCGGcCGAgGCGcucgacUUCGCCGCCuacgACGGc -3'
miRNA:   3'- -GCGCC-GCU-CGCac----GAGCGGCGG----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 67811 0.69 0.452592
Target:  5'- uCGCGGCaGcAGC-UGCcgccgUCGUCGUCGCGGg -3'
miRNA:   3'- -GCGCCG-C-UCGcACG-----AGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 67984 0.72 0.312636
Target:  5'- uCGCGGCG-GCccGCcggCGCCgcgGCCACGGg -3'
miRNA:   3'- -GCGCCGCuCGcaCGa--GCGG---CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 68019 0.72 0.319486
Target:  5'- gGCGGCGuccagguccaGGCG-GCcCGCCGgCGCGGc -3'
miRNA:   3'- gCGCCGC----------UCGCaCGaGCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 68102 0.69 0.452592
Target:  5'- uCGCGuCGcccAGCGUcaggcgcacgaGCUCGCCGCCGCu- -3'
miRNA:   3'- -GCGCcGC---UCGCA-----------CGAGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 68143 0.71 0.348003
Target:  5'- cCGCGG--AGCGUGgUCGUgGUCACGGc -3'
miRNA:   3'- -GCGCCgcUCGCACgAGCGgCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.