miRNA display CGI


Results 141 - 160 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 68264 0.71 0.333521
Target:  5'- gCGCGGCGA-CGgucGCggCGCCgggcGCCACGGc -3'
miRNA:   3'- -GCGCCGCUcGCa--CGa-GCGG----CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 68779 0.82 0.060512
Target:  5'- gCGCGGCGAG-GUGC--GCCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCUCgCACGagCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 68831 0.69 0.452592
Target:  5'- cCGCGcCGGcGUGUGCUCGaggCGCCGCGc -3'
miRNA:   3'- -GCGCcGCU-CGCACGAGCg--GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 68944 0.7 0.410301
Target:  5'- -cUGGCGcauGCGcgGCUCGCgGCgCACGGa -3'
miRNA:   3'- gcGCCGCu--CGCa-CGAGCGgCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 69323 0.7 0.409481
Target:  5'- aCGUGcGCGGGCGcG-UCGCCGCCcgcgagcGCGGc -3'
miRNA:   3'- -GCGC-CGCUCGCaCgAGCGGCGG-------UGCC- -5'
29371 3' -62.9 NC_006151.1 + 69433 0.75 0.192953
Target:  5'- gGCGGCGccgccgccguucGCGUcCUCGCgCGCCGCGGg -3'
miRNA:   3'- gCGCCGCu-----------CGCAcGAGCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 69629 0.72 0.319486
Target:  5'- uCGCGGuCGGcgucccgcGCGUGCggCGCCGCCG-GGu -3'
miRNA:   3'- -GCGCC-GCU--------CGCACGa-GCGGCGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 69801 0.7 0.378291
Target:  5'- gGCGGCacaGGCGcuccaggcGCUCGCCGuCCACGu -3'
miRNA:   3'- gCGCCGc--UCGCa-------CGAGCGGC-GGUGCc -5'
29371 3' -62.9 NC_006151.1 + 70677 0.69 0.452592
Target:  5'- cCGcCGGCGAGCGcuuccUGCUCuaCCGCCccuccuCGGu -3'
miRNA:   3'- -GC-GCCGCUCGC-----ACGAGc-GGCGGu-----GCC- -5'
29371 3' -62.9 NC_006151.1 + 70915 0.68 0.515522
Target:  5'- uGCcuGGCGcGCGUGCUggCGCUGCacgACGGc -3'
miRNA:   3'- gCG--CCGCuCGCACGA--GCGGCGg--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 71686 0.73 0.26781
Target:  5'- cCGCGuGcCGAGCGUG-UCGCCcaGCCGCGa -3'
miRNA:   3'- -GCGC-C-GCUCGCACgAGCGG--CGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 71780 0.66 0.610656
Target:  5'- aGCGGCG-GCGgggGCU-GCCGCaccaGCuGGc -3'
miRNA:   3'- gCGCCGCuCGCa--CGAgCGGCGg---UG-CC- -5'
29371 3' -62.9 NC_006151.1 + 72342 0.68 0.524812
Target:  5'- gGCcGCGAGCacg-UCGCCGCCGCaGGg -3'
miRNA:   3'- gCGcCGCUCGcacgAGCGGCGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 72381 0.69 0.461333
Target:  5'- gCGCaGCGucGCGUGC-CGCCGCaGCGu -3'
miRNA:   3'- -GCGcCGCu-CGCACGaGCGGCGgUGCc -5'
29371 3' -62.9 NC_006151.1 + 73385 0.66 0.63974
Target:  5'- gGgGGCGcgcAGCGcgGC-CGCCGCguaCGCGGc -3'
miRNA:   3'- gCgCCGC---UCGCa-CGaGCGGCG---GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 73669 0.69 0.452592
Target:  5'- gCGCGuacgaGAGCGUGUucUCGUCGgCGCGGc -3'
miRNA:   3'- -GCGCcg---CUCGCACG--AGCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 73787 0.66 0.63974
Target:  5'- gGCGGCGGcGCGcacCUCGgCGcCCACGu -3'
miRNA:   3'- gCGCCGCU-CGCac-GAGCgGC-GGUGCc -5'
29371 3' -62.9 NC_006151.1 + 74731 0.67 0.581701
Target:  5'- gGCGGCGuuguGCGUGUUgCGCCaguaGCUcUGGa -3'
miRNA:   3'- gCGCCGCu---CGCACGA-GCGG----CGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 75624 0.7 0.402142
Target:  5'- gCGCGcCGAGCccacggGCUUGCCGUCGuCGGg -3'
miRNA:   3'- -GCGCcGCUCGca----CGAGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 76656 0.68 0.49715
Target:  5'- cCGCGuGCGGGCGcGUgugCGCgGUCGCuGGg -3'
miRNA:   3'- -GCGC-CGCUCGCaCGa--GCGgCGGUG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.