miRNA display CGI


Results 61 - 80 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 122688 0.66 0.620345
Target:  5'- gCGCGGCGGcCGUggaGCUCGC-GCUcuuCGGg -3'
miRNA:   3'- -GCGCCGCUcGCA---CGAGCGgCGGu--GCC- -5'
29371 3' -62.9 NC_006151.1 + 122490 0.7 0.394086
Target:  5'- aCGCgGGCGAGaCG-GCgCGCCGgCgCGCGGa -3'
miRNA:   3'- -GCG-CCGCUC-GCaCGaGCGGC-G-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 122452 0.66 0.600982
Target:  5'- gGCGGCGuccacGGCGgcgGCgggCGCCgagGCCGgGGn -3'
miRNA:   3'- gCGCCGC-----UCGCa--CGa--GCGG---CGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 122398 0.77 0.152583
Target:  5'- gCGCGcGCuGGCGgcGCUCGCCGCCGUGGa -3'
miRNA:   3'- -GCGC-CGcUCGCa-CGAGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 122174 0.68 0.49715
Target:  5'- gGCGGCGGGCucGUGg-UGCCGCCGg-- -3'
miRNA:   3'- gCGCCGCUCG--CACgaGCGGCGGUgcc -5'
29371 3' -62.9 NC_006151.1 + 121994 0.66 0.610656
Target:  5'- gGCGGC--GCGUGC-CGCUuCCACGc -3'
miRNA:   3'- gCGCCGcuCGCACGaGCGGcGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 121930 0.69 0.435385
Target:  5'- cCGCGuGCuGGGgGcGCUgGCCGCCGcCGGc -3'
miRNA:   3'- -GCGC-CG-CUCgCaCGAgCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 121782 0.67 0.562551
Target:  5'- cCGCGGUGGuGCGcgaGCUgGCC-CCACGc -3'
miRNA:   3'- -GCGCCGCU-CGCa--CGAgCGGcGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 121059 0.68 0.479077
Target:  5'- cCGCGcGUGGGCuucacGUGCUCGCagacggGCgGCGGc -3'
miRNA:   3'- -GCGC-CGCUCG-----CACGAGCGg-----CGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 120790 0.69 0.418563
Target:  5'- aCGCGGcCGAcGCGgaGCgCGCCGCgCGCGa -3'
miRNA:   3'- -GCGCC-GCU-CGCa-CGaGCGGCG-GUGCc -5'
29371 3' -62.9 NC_006151.1 + 120074 0.65 0.646526
Target:  5'- aGgGGCGcaacuuccgcaaccAGUuccagccgGUGCUgCGCCGCCGCGu -3'
miRNA:   3'- gCgCCGC--------------UCG--------CACGA-GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 119455 0.7 0.394086
Target:  5'- cCGCGGCGA-CGUGgaCGCCgugcGCUACGu -3'
miRNA:   3'- -GCGCCGCUcGCACgaGCGG----CGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 119400 0.69 0.451723
Target:  5'- uGCuGGCGcGCGUGCUguucuaccuggagCGCUGCgaCGCGGg -3'
miRNA:   3'- gCG-CCGCuCGCACGA-------------GCGGCG--GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 119051 0.72 0.305898
Target:  5'- gGCGGCGccGCG-GC-CGCCuCCGCGGg -3'
miRNA:   3'- gCGCCGCu-CGCaCGaGCGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 118947 0.71 0.333521
Target:  5'- aCGCGGCGcugucgcuggaGGC--GCUCGUCGCCGcCGGc -3'
miRNA:   3'- -GCGCCGC-----------UCGcaCGAGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 118878 0.72 0.286355
Target:  5'- aGCGGCGGcGCGgcgGCgacgCgGCCGCCgGCGGc -3'
miRNA:   3'- gCGCCGCU-CGCa--CGa---G-CGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 118442 0.69 0.452592
Target:  5'- gGUGuGCGcGCG-GCUCgGCCugGCCGCGGa -3'
miRNA:   3'- gCGC-CGCuCGCaCGAG-CGG--CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 118153 0.66 0.591328
Target:  5'- cCGCGGCG-GUGg---CGCCGCUggugcGCGGc -3'
miRNA:   3'- -GCGCCGCuCGCacgaGCGGCGG-----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 117624 0.78 0.128607
Target:  5'- uCGCGcGCGAGCGUGCccacgUGCaCGCCGCGc -3'
miRNA:   3'- -GCGC-CGCUCGCACGa----GCG-GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 117579 0.67 0.562551
Target:  5'- cCGCGGagGAugggccGCGUGg-CGCCGCCGCa- -3'
miRNA:   3'- -GCGCCg-CU------CGCACgaGCGGCGGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.