miRNA display CGI


Results 81 - 100 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 117547 0.67 0.553038
Target:  5'- aCGCGGCGA-CGcGC-CGCgGCCAgaaGGg -3'
miRNA:   3'- -GCGCCGCUcGCaCGaGCGgCGGUg--CC- -5'
29371 3' -62.9 NC_006151.1 + 117294 0.74 0.233644
Target:  5'- gCGCGcGCGAGC-UGCUCGgcgcUCGCCACGc -3'
miRNA:   3'- -GCGC-CGCUCGcACGAGC----GGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 117246 0.68 0.515522
Target:  5'- aCGuCGGCGGGCccgagGCgcggGCCGCgCGCGGc -3'
miRNA:   3'- -GC-GCCGCUCGca---CGag--CGGCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 116528 0.66 0.620345
Target:  5'- cCGCGuCGuagacGCGgaaCUgGCCGCCGCGGu -3'
miRNA:   3'- -GCGCcGCu----CGCac-GAgCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 116206 0.74 0.237978
Target:  5'- gCGCGcGCGAGCGUGauguuggcgaGCCgcGCCACGGc -3'
miRNA:   3'- -GCGC-CGCUCGCACgag-------CGG--CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 115655 0.69 0.435385
Target:  5'- uCGCGGCcgauGGuCGUcacGgUgGCCGCCACGGg -3'
miRNA:   3'- -GCGCCGc---UC-GCA---CgAgCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 115214 0.66 0.620345
Target:  5'- gCGCGcGCGAuCGUgGC-CGCUGCCGCc- -3'
miRNA:   3'- -GCGC-CGCUcGCA-CGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 115177 0.72 0.312636
Target:  5'- gCGCGGCaGGGgGcGCUCcagccaGCgCGCCGCGGg -3'
miRNA:   3'- -GCGCCG-CUCgCaCGAG------CG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 115065 0.66 0.630042
Target:  5'- -cCGGgGGGCGgcugaGCUCgGCCGUCAUGa -3'
miRNA:   3'- gcGCCgCUCGCa----CGAG-CGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 114539 0.68 0.470163
Target:  5'- cCGCGGaCGA-CGUGCcCGCCGUCAgCGc -3'
miRNA:   3'- -GCGCC-GCUcGCACGaGCGGCGGU-GCc -5'
29371 3' -62.9 NC_006151.1 + 113646 0.72 0.286355
Target:  5'- gCGCGGCGAcGCGcUGCgcaaggcgcagaUCGCCGCCGa-- -3'
miRNA:   3'- -GCGCCGCU-CGC-ACG------------AGCGGCGGUgcc -5'
29371 3' -62.9 NC_006151.1 + 113519 0.7 0.394086
Target:  5'- uCGUGGCGGacGCGcGCUuccuggcgcugaUGCgCGCCGCGGg -3'
miRNA:   3'- -GCGCCGCU--CGCaCGA------------GCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 113288 0.66 0.630042
Target:  5'- cCGCGGCGuacGCGcGCUacCGCgcgguggaCGCCACGc -3'
miRNA:   3'- -GCGCCGCu--CGCaCGA--GCG--------GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 113081 0.71 0.348003
Target:  5'- aGCGcGCGGcCGUcGC-CGCCGCCACcGGg -3'
miRNA:   3'- gCGC-CGCUcGCA-CGaGCGGCGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 113030 0.69 0.461333
Target:  5'- aCGCGuGCGccGgGUGCUgCGCgGCgGCGGa -3'
miRNA:   3'- -GCGC-CGCu-CgCACGA-GCGgCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 112970 0.71 0.35541
Target:  5'- cCGUGGCGGacGCGcGCgCGCCGCCGagccUGGg -3'
miRNA:   3'- -GCGCCGCU--CGCaCGaGCGGCGGU----GCC- -5'
29371 3' -62.9 NC_006151.1 + 112176 0.67 0.534164
Target:  5'- cCGCGGCGaAGCGa--UCGC-GCCGCGc -3'
miRNA:   3'- -GCGCCGC-UCGCacgAGCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 111366 0.68 0.515522
Target:  5'- gCGgGGCGAGgGccccucGCcgucgUCGCCGCCGcCGGc -3'
miRNA:   3'- -GCgCCGCUCgCa-----CG-----AGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 111311 0.69 0.443942
Target:  5'- aCGCGGCGGccGCGUGC-C-CgGgCACGGg -3'
miRNA:   3'- -GCGCCGCU--CGCACGaGcGgCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 111119 0.67 0.543574
Target:  5'- gGCGGgGAGCGcgcgucugUGCgCGCCcCCGCGc -3'
miRNA:   3'- gCGCCgCUCGC--------ACGaGCGGcGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.