miRNA display CGI


Results 101 - 120 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 109718 0.69 0.452592
Target:  5'- -cCGGCGAccccGCuGcGCUCGCCGCUggaGCGGa -3'
miRNA:   3'- gcGCCGCU----CG-CaCGAGCGGCGG---UGCC- -5'
29371 3' -62.9 NC_006151.1 + 107091 0.77 0.137412
Target:  5'- gGCGGUGucgcGCGUGCUCugggcgccgcccgaGCCGCCGCGa -3'
miRNA:   3'- gCGCCGCu---CGCACGAG--------------CGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 106796 0.72 0.286355
Target:  5'- cCGCGGCG-GCgGUGCUCGUCGgggccCCGCuGGu -3'
miRNA:   3'- -GCGCCGCuCG-CACGAGCGGC-----GGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 106656 0.7 0.370555
Target:  5'- cCGCGGCGcaCGUGCgCGagGCCGCGGc -3'
miRNA:   3'- -GCGCCGCucGCACGaGCggCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 106350 0.72 0.305898
Target:  5'- aCGCGGUGGacacgcuggacGCGgGCgcgCGcCCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCU-----------CGCaCGa--GC-GGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 105885 0.66 0.63974
Target:  5'- gCGCGGUcGGCGacaaGCUgGCgGCCAUGc -3'
miRNA:   3'- -GCGCCGcUCGCa---CGAgCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 105676 0.67 0.572107
Target:  5'- aCGCGGCcuacGGCGgcgcgggGCcgaCGCCGgCGCGGc -3'
miRNA:   3'- -GCGCCGc---UCGCa------CGa--GCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 105229 0.66 0.600982
Target:  5'- uGCGGC-AGCG-GCUgacgGCCGCCGaGGu -3'
miRNA:   3'- gCGCCGcUCGCaCGAg---CGGCGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 105038 0.69 0.443942
Target:  5'- gGCGGCGcuGC-UGCUCGgCGCCGuCGa -3'
miRNA:   3'- gCGCCGCu-CGcACGAGCgGCGGU-GCc -5'
29371 3' -62.9 NC_006151.1 + 104908 0.75 0.208039
Target:  5'- aCGCGGCG-GCG-GCgcgCGaCCGCgACGGg -3'
miRNA:   3'- -GCGCCGCuCGCaCGa--GC-GGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 104863 0.66 0.591328
Target:  5'- cCGCGGCGAcggaGCGcGCcacgCGCCuGCUGCGc -3'
miRNA:   3'- -GCGCCGCU----CGCaCGa---GCGG-CGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 104822 0.79 0.102897
Target:  5'- gGCGGCGcGCGacgGcCUCGCCGCgGCGGa -3'
miRNA:   3'- gCGCCGCuCGCa--C-GAGCGGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 104783 0.66 0.630042
Target:  5'- aCGCGGagccauGcGCGcGCUCGUgCGCCGCGa -3'
miRNA:   3'- -GCGCCg-----CuCGCaCGAGCG-GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 104572 0.69 0.451723
Target:  5'- gCGCGGCGcgcGGaCGUGCUgcagGCCggcggcaGCCGCGGc -3'
miRNA:   3'- -GCGCCGC---UC-GCACGAg---CGG-------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 104402 0.77 0.145347
Target:  5'- uCGcCGGCG-GCGUGCUggcccgCGCCGCCGcCGGc -3'
miRNA:   3'- -GC-GCCGCuCGCACGA------GCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 104306 0.68 0.479077
Target:  5'- aGCGGCuGAcGUG-GCUcgacgacuaCGCCGUCGCGGc -3'
miRNA:   3'- gCGCCG-CU-CGCaCGA---------GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 104273 0.74 0.223098
Target:  5'- gCGCGGCG-GCGgGCcCGCCGCUGCaGGc -3'
miRNA:   3'- -GCGCCGCuCGCaCGaGCGGCGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 104135 0.71 0.362928
Target:  5'- aCGUGGCGGccgaccGCG-GCUaCGaCGCCGCGGa -3'
miRNA:   3'- -GCGCCGCU------CGCaCGA-GCgGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 104021 0.66 0.600015
Target:  5'- gCGCGGCggaggugGAGCGcGCgcagCGCCaGCuCugGGc -3'
miRNA:   3'- -GCGCCG-------CUCGCaCGa---GCGG-CG-GugCC- -5'
29371 3' -62.9 NC_006151.1 + 103976 0.68 0.479077
Target:  5'- gCGuCGGCGAGCuGgagGCg-GCCGUgGCGGc -3'
miRNA:   3'- -GC-GCCGCUCG-Ca--CGagCGGCGgUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.