miRNA display CGI


Results 121 - 140 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 103739 0.7 0.386135
Target:  5'- cCGCuGGCGcGGCaGUGCgaggaGCgCGCCGCGGc -3'
miRNA:   3'- -GCG-CCGC-UCG-CACGag---CG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 103683 0.85 0.039088
Target:  5'- gCGCGGCGGGgGUGCUgcgCGCCGCCGUGGa -3'
miRNA:   3'- -GCGCCGCUCgCACGA---GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 103632 0.66 0.620345
Target:  5'- aCGCGGUGgcGGCGgcGCUgGCgGaCGCGGa -3'
miRNA:   3'- -GCGCCGC--UCGCa-CGAgCGgCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 103345 0.67 0.581701
Target:  5'- gGCGGCGcAGCa-GCgCGCCGCCGa-- -3'
miRNA:   3'- gCGCCGC-UCGcaCGaGCGGCGGUgcc -5'
29371 3' -62.9 NC_006151.1 + 102885 0.7 0.39169
Target:  5'- cCGCGGUG-GCGgGCcugCGCCGCCucgucgacucgcugGCGGc -3'
miRNA:   3'- -GCGCCGCuCGCaCGa--GCGGCGG--------------UGCC- -5'
29371 3' -62.9 NC_006151.1 + 102480 0.67 0.552089
Target:  5'- gCGCaGCucucGGCGUGCUucauggaCGCCGCggCGCGGg -3'
miRNA:   3'- -GCGcCGc---UCGCACGA-------GCGGCG--GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 102006 0.66 0.610656
Target:  5'- cCGCGcacccGCGAGCccauggGCuUCGCCGUC-CGGg -3'
miRNA:   3'- -GCGC-----CGCUCGca----CG-AGCGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 101865 0.74 0.233644
Target:  5'- gGCGGCGcaccGCucccGC-CGCCGCCGCGGg -3'
miRNA:   3'- gCGCCGCu---CGca--CGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 101553 0.67 0.543574
Target:  5'- gCGCccGGCGGaCGUGUacgCGCaCGUCGCGGg -3'
miRNA:   3'- -GCG--CCGCUcGCACGa--GCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 101481 0.71 0.325746
Target:  5'- cCGCGGCGAcGuCGUGUaCGUCuucgacccgcacgGCCACGGg -3'
miRNA:   3'- -GCGCCGCU-C-GCACGaGCGG-------------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 100668 0.72 0.312636
Target:  5'- gCGCGGCGuGCuggcGCUCGUCGCgACGc -3'
miRNA:   3'- -GCGCCGCuCGca--CGAGCGGCGgUGCc -5'
29371 3' -62.9 NC_006151.1 + 100070 0.66 0.610656
Target:  5'- gCGCGGCcgccGAG-GUGCUCGaggCGCCGgcgcCGGc -3'
miRNA:   3'- -GCGCCG----CUCgCACGAGCg--GCGGU----GCC- -5'
29371 3' -62.9 NC_006151.1 + 99732 0.77 0.134747
Target:  5'- gCGCGGCGcuCGUcgaccucGC-CGCCGCCGCGGa -3'
miRNA:   3'- -GCGCCGCucGCA-------CGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 99630 0.66 0.609688
Target:  5'- cCGCGcGCGAGgcccucaacaCGUgGCUCGCCuuccgcgcgcagaGCCGCuGGg -3'
miRNA:   3'- -GCGC-CGCUC----------GCA-CGAGCGG-------------CGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 99570 0.67 0.531352
Target:  5'- gCGCGGCGcugcugcgcgagguGGCGgcgGCcgagCGCCGCgC-CGGg -3'
miRNA:   3'- -GCGCCGC--------------UCGCa--CGa---GCGGCG-GuGCC- -5'
29371 3' -62.9 NC_006151.1 + 99214 0.67 0.581701
Target:  5'- gGCGGUGcaggccAGCGc-CUCGCCGCUGCaGGu -3'
miRNA:   3'- gCGCCGC------UCGCacGAGCGGCGGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 99138 0.75 0.184894
Target:  5'- cCGgGGCGcaGGcCGUGCacguggcCGCCGCCGCGGa -3'
miRNA:   3'- -GCgCCGC--UC-GCACGa------GCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 98927 0.66 0.63974
Target:  5'- aCGCuGcGCGAGCa-GUUCGCCGagGCGGc -3'
miRNA:   3'- -GCG-C-CGCUCGcaCGAGCGGCggUGCC- -5'
29371 3' -62.9 NC_006151.1 + 98617 0.68 0.473718
Target:  5'- uCGUGaGCGAGUG-GUgCGCCGCCuucgacgaggcccugGCGGg -3'
miRNA:   3'- -GCGC-CGCUCGCaCGaGCGGCGG---------------UGCC- -5'
29371 3' -62.9 NC_006151.1 + 98427 0.67 0.534164
Target:  5'- uGCgaGGCGGcCGUGCUCGCCGagaaCCugGc -3'
miRNA:   3'- gCG--CCGCUcGCACGAGCGGC----GGugCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.