Results 121 - 140 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 128267 | 0.66 | 0.591328 |
Target: 5'- aGCGGCacuGCGcGCgcagCGCCGCgCGCaGGu -3' miRNA: 3'- gCGCCGcu-CGCaCGa---GCGGCG-GUG-CC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 127455 | 0.66 | 0.591328 |
Target: 5'- gGCGGCGcacgaAGCGcuggGCggCGCggaacgaGCCGCGGa -3' miRNA: 3'- gCGCCGC-----UCGCa---CGa-GCGg------CGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 38868 | 0.66 | 0.600982 |
Target: 5'- cCGCGGCccuccgaGGCGgccCUCGCCGCCuACu- -3' miRNA: 3'- -GCGCCGc------UCGCac-GAGCGGCGG-UGcc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 99630 | 0.66 | 0.609688 |
Target: 5'- cCGCGcGCGAGgcccucaacaCGUgGCUCGCCuuccgcgcgcagaGCCGCuGGg -3' miRNA: 3'- -GCGC-CGCUC----------GCA-CGAGCGG-------------CGGUG-CC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 71780 | 0.66 | 0.610656 |
Target: 5'- aGCGGCG-GCGgggGCU-GCCGCaccaGCuGGc -3' miRNA: 3'- gCGCCGCuCGCa--CGAgCGGCGg---UG-CC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 62767 | 0.66 | 0.620345 |
Target: 5'- uGCGGCccGUGUGCcauuccaucUCGCCccaccCCACGGc -3' miRNA: 3'- gCGCCGcuCGCACG---------AGCGGc----GGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 58415 | 0.66 | 0.620345 |
Target: 5'- gCGCaGCuGGGCGUGCg-GCaGCCACGc -3' miRNA: 3'- -GCGcCG-CUCGCACGagCGgCGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 58122 | 0.66 | 0.620345 |
Target: 5'- gGCGGgGucGCGUcGCccgCGCCGUaCGCGGc -3' miRNA: 3'- gCGCCgCu-CGCA-CGa--GCGGCG-GUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 52817 | 0.66 | 0.620345 |
Target: 5'- uGCGGCcGGCGUugGC-CGCgaGCCAgCGGu -3' miRNA: 3'- gCGCCGcUCGCA--CGaGCGg-CGGU-GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 135533 | 0.66 | 0.620345 |
Target: 5'- gGCGGCGAGCGggGCggggaggaucaCGuuGagCACGGc -3' miRNA: 3'- gCGCCGCUCGCa-CGa----------GCggCg-GUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 36641 | 0.66 | 0.619375 |
Target: 5'- gGCGGCG-GCG-GCgcccccucCGCCGgaggggaCCGCGGu -3' miRNA: 3'- gCGCCGCuCGCaCGa-------GCGGC-------GGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 102006 | 0.66 | 0.610656 |
Target: 5'- cCGCGcacccGCGAGCccauggGCuUCGCCGUC-CGGg -3' miRNA: 3'- -GCGC-----CGCUCGca----CG-AGCGGCGGuGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 21104 | 0.66 | 0.610656 |
Target: 5'- cCGCGGgGAGCcggGUcacgUCGCgCGCCACc- -3' miRNA: 3'- -GCGCCgCUCGca-CG----AGCG-GCGGUGcc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 128809 | 0.66 | 0.610656 |
Target: 5'- gCGCGGCGcGCGUGg-CcCCGUaCGCGGc -3' miRNA: 3'- -GCGCCGCuCGCACgaGcGGCG-GUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 121994 | 0.66 | 0.610656 |
Target: 5'- gGCGGC--GCGUGC-CGCUuCCACGc -3' miRNA: 3'- gCGCCGcuCGCACGaGCGGcGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 95208 | 0.66 | 0.610656 |
Target: 5'- uGCccaGCGAGCG-GCUgCGCCGCaCGCc- -3' miRNA: 3'- gCGc--CGCUCGCaCGA-GCGGCG-GUGcc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 92728 | 0.66 | 0.610656 |
Target: 5'- aCGUGGUG-GCcaUGCUcaCGCCGgCGCGGc -3' miRNA: 3'- -GCGCCGCuCGc-ACGA--GCGGCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 66590 | 0.66 | 0.610656 |
Target: 5'- gCGCGGcCGAgGCGcucgacUUCGCCGCCuacgACGGc -3' miRNA: 3'- -GCGCC-GCU-CGCac----GAGCGGCGG----UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 100070 | 0.66 | 0.610656 |
Target: 5'- gCGCGGCcgccGAG-GUGCUCGaggCGCCGgcgcCGGc -3' miRNA: 3'- -GCGCCG----CUCgCACGAGCg--GCGGU----GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 81902 | 0.66 | 0.610656 |
Target: 5'- gCGCGcCGGucGCG-GCgCGCCGCCuCGGa -3' miRNA: 3'- -GCGCcGCU--CGCaCGaGCGGCGGuGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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