miRNA display CGI


Results 81 - 100 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 102006 0.66 0.610656
Target:  5'- cCGCGcacccGCGAGCccauggGCuUCGCCGUC-CGGg -3'
miRNA:   3'- -GCGC-----CGCUCGca----CG-AGCGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 21104 0.66 0.610656
Target:  5'- cCGCGGgGAGCcggGUcacgUCGCgCGCCACc- -3'
miRNA:   3'- -GCGCCgCUCGca-CG----AGCG-GCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 128809 0.66 0.610656
Target:  5'- gCGCGGCGcGCGUGg-CcCCGUaCGCGGc -3'
miRNA:   3'- -GCGCCGCuCGCACgaGcGGCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 121994 0.66 0.610656
Target:  5'- gGCGGC--GCGUGC-CGCUuCCACGc -3'
miRNA:   3'- gCGCCGcuCGCACGaGCGGcGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 95208 0.66 0.610656
Target:  5'- uGCccaGCGAGCG-GCUgCGCCGCaCGCc- -3'
miRNA:   3'- gCGc--CGCUCGCaCGA-GCGGCG-GUGcc -5'
29371 3' -62.9 NC_006151.1 + 92728 0.66 0.610656
Target:  5'- aCGUGGUG-GCcaUGCUcaCGCCGgCGCGGc -3'
miRNA:   3'- -GCGCCGCuCGc-ACGA--GCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 66590 0.66 0.610656
Target:  5'- gCGCGGcCGAgGCGcucgacUUCGCCGCCuacgACGGc -3'
miRNA:   3'- -GCGCC-GCU-CGCac----GAGCGGCGG----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 58122 0.66 0.620345
Target:  5'- gGCGGgGucGCGUcGCccgCGCCGUaCGCGGc -3'
miRNA:   3'- gCGCCgCu-CGCA-CGa--GCGGCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 58415 0.66 0.620345
Target:  5'- gCGCaGCuGGGCGUGCg-GCaGCCACGc -3'
miRNA:   3'- -GCGcCG-CUCGCACGagCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 62767 0.66 0.620345
Target:  5'- uGCGGCccGUGUGCcauuccaucUCGCCccaccCCACGGc -3'
miRNA:   3'- gCGCCGcuCGCACG---------AGCGGc----GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 90728 0.66 0.629072
Target:  5'- gGCGGCGAcggugGCG-GCggCGCCcucggggGCgGCGGg -3'
miRNA:   3'- gCGCCGCU-----CGCaCGa-GCGG-------CGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 94231 0.66 0.629072
Target:  5'- aGCGGUagaacucGAGCucggGCUCGCUGagCGCGGc -3'
miRNA:   3'- gCGCCG-------CUCGca--CGAGCGGCg-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 78472 0.66 0.627132
Target:  5'- -uCGGCGAGgugaugcggaugcuCGUGaaCGCCGCCGUGGu -3'
miRNA:   3'- gcGCCGCUC--------------GCACgaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 21334 0.66 0.627132
Target:  5'- gCGCGGCGGGgGUccgcggcuggaacgGCUcCGCgGgCUGCGGc -3'
miRNA:   3'- -GCGCCGCUCgCA--------------CGA-GCGgC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 89193 0.66 0.624223
Target:  5'- gGCGGagaGGGCGagaguucucccucgcUGCUguUGCCGCCGCc- -3'
miRNA:   3'- gCGCCg--CUCGC---------------ACGA--GCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 139907 0.66 0.620345
Target:  5'- aCGaCGGCuuccgcgccGCGgGCUCGUCGCCGUGGg -3'
miRNA:   3'- -GC-GCCGcu-------CGCaCGAGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 122688 0.66 0.620345
Target:  5'- gCGCGGCGGcCGUggaGCUCGC-GCUcuuCGGg -3'
miRNA:   3'- -GCGCCGCUcGCA---CGAGCGgCGGu--GCC- -5'
29371 3' -62.9 NC_006151.1 + 116528 0.66 0.620345
Target:  5'- cCGCGuCGuagacGCGgaaCUgGCCGCCGCGGu -3'
miRNA:   3'- -GCGCcGCu----CGCac-GAgCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 115214 0.66 0.620345
Target:  5'- gCGCGcGCGAuCGUgGC-CGCUGCCGCc- -3'
miRNA:   3'- -GCGC-CGCUcGCA-CGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 103632 0.66 0.620345
Target:  5'- aCGCGGUGgcGGCGgcGCUgGCgGaCGCGGa -3'
miRNA:   3'- -GCGCCGC--UCGCa-CGAgCGgCgGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.