Results 1 - 20 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29371 | 3' | -62.9 | NC_006151.1 | + | 1837 | 0.71 | 0.333521 |
Target: 5'- cCGCcgGGcCGAGgGgaccgagGC-CGCCGCCGCGGa -3' miRNA: 3'- -GCG--CC-GCUCgCa------CGaGCGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 2114 | 0.72 | 0.286355 |
Target: 5'- cCGCGGgGc-CG-GCcgUCGCCGCCGCGGa -3' miRNA: 3'- -GCGCCgCucGCaCG--AGCGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 2332 | 0.68 | 0.515522 |
Target: 5'- gGCGGCcucGGCGUcggGCUCcaGCagCGCCGCGGc -3' miRNA: 3'- gCGCCGc--UCGCA---CGAG--CG--GCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 2545 | 0.67 | 0.553038 |
Target: 5'- gCGCuGGCGGGCcauguccuUGCa-GCCGuCCACGGu -3' miRNA: 3'- -GCG-CCGCUCGc-------ACGagCGGC-GGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 3090 | 0.76 | 0.156323 |
Target: 5'- gGCGGCGAGCa-GCgccgagagGCCGCCGCGGc -3' miRNA: 3'- gCGCCGCUCGcaCGag------CGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 3247 | 0.72 | 0.299272 |
Target: 5'- gCGCGGCG-GCGgaGCggggCGCCGCgGCGc -3' miRNA: 3'- -GCGCCGCuCGCa-CGa---GCGGCGgUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 3408 | 0.72 | 0.299272 |
Target: 5'- cCGCGGCGuGUGgGuCUCGCCGgC-CGGg -3' miRNA: 3'- -GCGCCGCuCGCaC-GAGCGGCgGuGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 3575 | 0.67 | 0.543574 |
Target: 5'- aGCGGCGcuuGCGccgggGCccccgguccucuUCGUCGUCGCGGu -3' miRNA: 3'- gCGCCGCu--CGCa----CG------------AGCGGCGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 3971 | 0.69 | 0.418563 |
Target: 5'- gCGCGGCGgccucGGCGagccgGC-CGCgGCCACGu -3' miRNA: 3'- -GCGCCGC-----UCGCa----CGaGCGgCGGUGCc -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 4024 | 0.7 | 0.378291 |
Target: 5'- cCGCGGCGuagguccaGGCG-GcCUCGCgGgCGCGGg -3' miRNA: 3'- -GCGCCGC--------UCGCaC-GAGCGgCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 4227 | 0.67 | 0.572107 |
Target: 5'- gCGCgGGCGGGCGcggGCa-GCCGgaGCGGg -3' miRNA: 3'- -GCG-CCGCUCGCa--CGagCGGCggUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 4336 | 0.68 | 0.49715 |
Target: 5'- gCGCGGCG-GCGaagGCggCGCgGaCGCGGg -3' miRNA: 3'- -GCGCCGCuCGCa--CGa-GCGgCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 4795 | 0.71 | 0.333521 |
Target: 5'- cCGCGGCGcgguAGCGgGC-CGCgGCCugGCGGa -3' miRNA: 3'- -GCGCCGC----UCGCaCGaGCGgCGG--UGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 5008 | 0.66 | 0.591328 |
Target: 5'- gCGCGGgggcCGGGCGgGCUCcgggGCCggggccggggagGCCGCGGc -3' miRNA: 3'- -GCGCC----GCUCGCaCGAG----CGG------------CGGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 5091 | 0.69 | 0.452592 |
Target: 5'- cCGCGGCGGGCGccgGCggagacgguggCGgcCCGgCGCGGg -3' miRNA: 3'- -GCGCCGCUCGCa--CGa----------GC--GGCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 5339 | 0.67 | 0.572107 |
Target: 5'- cCGCGGCGgagGGCGccCUCuCCGgCGCGGc -3' miRNA: 3'- -GCGCCGC---UCGCacGAGcGGCgGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 5550 | 0.72 | 0.280063 |
Target: 5'- uCGCGGCG-GCGgGCUCGUCGagcaggggcUCGCGGu -3' miRNA: 3'- -GCGCCGCuCGCaCGAGCGGC---------GGUGCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 5617 | 0.69 | 0.426925 |
Target: 5'- gGCGGaGGGgGcGC-CGCCGCCGcCGGg -3' miRNA: 3'- gCGCCgCUCgCaCGaGCGGCGGU-GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 6232 | 0.7 | 0.394086 |
Target: 5'- cCGCGGCgccggGAGCccugGCU-GCCGCCGuCGGg -3' miRNA: 3'- -GCGCCG-----CUCGca--CGAgCGGCGGU-GCC- -5' |
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29371 | 3' | -62.9 | NC_006151.1 | + | 7024 | 0.69 | 0.426925 |
Target: 5'- cCGCGGCG-GCcaucucgGCUCGCCcggGCCAaUGGg -3' miRNA: 3'- -GCGCCGCuCGca-----CGAGCGG---CGGU-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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