miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 1837 0.71 0.333521
Target:  5'- cCGCcgGGcCGAGgGgaccgagGC-CGCCGCCGCGGa -3'
miRNA:   3'- -GCG--CC-GCUCgCa------CGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 2114 0.72 0.286355
Target:  5'- cCGCGGgGc-CG-GCcgUCGCCGCCGCGGa -3'
miRNA:   3'- -GCGCCgCucGCaCG--AGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 2332 0.68 0.515522
Target:  5'- gGCGGCcucGGCGUcggGCUCcaGCagCGCCGCGGc -3'
miRNA:   3'- gCGCCGc--UCGCA---CGAG--CG--GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 2545 0.67 0.553038
Target:  5'- gCGCuGGCGGGCcauguccuUGCa-GCCGuCCACGGu -3'
miRNA:   3'- -GCG-CCGCUCGc-------ACGagCGGC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 3090 0.76 0.156323
Target:  5'- gGCGGCGAGCa-GCgccgagagGCCGCCGCGGc -3'
miRNA:   3'- gCGCCGCUCGcaCGag------CGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 3247 0.72 0.299272
Target:  5'- gCGCGGCG-GCGgaGCggggCGCCGCgGCGc -3'
miRNA:   3'- -GCGCCGCuCGCa-CGa---GCGGCGgUGCc -5'
29371 3' -62.9 NC_006151.1 + 3408 0.72 0.299272
Target:  5'- cCGCGGCGuGUGgGuCUCGCCGgC-CGGg -3'
miRNA:   3'- -GCGCCGCuCGCaC-GAGCGGCgGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 3575 0.67 0.543574
Target:  5'- aGCGGCGcuuGCGccgggGCccccgguccucuUCGUCGUCGCGGu -3'
miRNA:   3'- gCGCCGCu--CGCa----CG------------AGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 3971 0.69 0.418563
Target:  5'- gCGCGGCGgccucGGCGagccgGC-CGCgGCCACGu -3'
miRNA:   3'- -GCGCCGC-----UCGCa----CGaGCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 4024 0.7 0.378291
Target:  5'- cCGCGGCGuagguccaGGCG-GcCUCGCgGgCGCGGg -3'
miRNA:   3'- -GCGCCGC--------UCGCaC-GAGCGgCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 4227 0.67 0.572107
Target:  5'- gCGCgGGCGGGCGcggGCa-GCCGgaGCGGg -3'
miRNA:   3'- -GCG-CCGCUCGCa--CGagCGGCggUGCC- -5'
29371 3' -62.9 NC_006151.1 + 4336 0.68 0.49715
Target:  5'- gCGCGGCG-GCGaagGCggCGCgGaCGCGGg -3'
miRNA:   3'- -GCGCCGCuCGCa--CGa-GCGgCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 4795 0.71 0.333521
Target:  5'- cCGCGGCGcgguAGCGgGC-CGCgGCCugGCGGa -3'
miRNA:   3'- -GCGCCGC----UCGCaCGaGCGgCGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 5008 0.66 0.591328
Target:  5'- gCGCGGgggcCGGGCGgGCUCcgggGCCggggccggggagGCCGCGGc -3'
miRNA:   3'- -GCGCC----GCUCGCaCGAG----CGG------------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 5091 0.69 0.452592
Target:  5'- cCGCGGCGGGCGccgGCggagacgguggCGgcCCGgCGCGGg -3'
miRNA:   3'- -GCGCCGCUCGCa--CGa----------GC--GGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 5339 0.67 0.572107
Target:  5'- cCGCGGCGgagGGCGccCUCuCCGgCGCGGc -3'
miRNA:   3'- -GCGCCGC---UCGCacGAGcGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 5550 0.72 0.280063
Target:  5'- uCGCGGCG-GCGgGCUCGUCGagcaggggcUCGCGGu -3'
miRNA:   3'- -GCGCCGCuCGCaCGAGCGGC---------GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 5617 0.69 0.426925
Target:  5'- gGCGGaGGGgGcGC-CGCCGCCGcCGGg -3'
miRNA:   3'- gCGCCgCUCgCaCGaGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 6232 0.7 0.394086
Target:  5'- cCGCGGCgccggGAGCccugGCU-GCCGCCGuCGGg -3'
miRNA:   3'- -GCGCCG-----CUCGca--CGAgCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 7024 0.69 0.426925
Target:  5'- cCGCGGCG-GCcaucucgGCUCGCCcggGCCAaUGGg -3'
miRNA:   3'- -GCGCCGCuCGca-----CGAGCGG---CGGU-GCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.