miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 56564 0.66 0.630042
Target:  5'- uGCcgGGCGA-CGcGC-CGCCGCCcgACGGg -3'
miRNA:   3'- gCG--CCGCUcGCaCGaGCGGCGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 76701 0.66 0.630042
Target:  5'- aGUGGCGcgGGCGcGC-CGCgGCCGCc- -3'
miRNA:   3'- gCGCCGC--UCGCaCGaGCGgCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 104783 0.66 0.630042
Target:  5'- aCGCGGagccauGcGCGcGCUCGUgCGCCGCGa -3'
miRNA:   3'- -GCGCCg-----CuCGCaCGAGCG-GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 113288 0.66 0.630042
Target:  5'- cCGCGGCGuacGCGcGCUacCGCgcgguggaCGCCACGc -3'
miRNA:   3'- -GCGCCGCu--CGCaCGA--GCG--------GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 115065 0.66 0.630042
Target:  5'- -cCGGgGGGCGgcugaGCUCgGCCGUCAUGa -3'
miRNA:   3'- gcGCCgCUCGCa----CGAG-CGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 127842 0.66 0.629072
Target:  5'- gGCGGCGucGCG-GCUgcgccggagggggCGCCGCC-CGc -3'
miRNA:   3'- gCGCCGCu-CGCaCGA-------------GCGGCGGuGCc -5'
29371 3' -62.9 NC_006151.1 + 90728 0.66 0.629072
Target:  5'- gGCGGCGAcggugGCG-GCggCGCCcucggggGCgGCGGg -3'
miRNA:   3'- gCGCCGCU-----CGCaCGa-GCGG-------CGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 94231 0.66 0.629072
Target:  5'- aGCGGUagaacucGAGCucggGCUCGCUGagCGCGGc -3'
miRNA:   3'- gCGCCG-------CUCGca--CGAGCGGCg-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 21334 0.66 0.627132
Target:  5'- gCGCGGCGGGgGUccgcggcuggaacgGCUcCGCgGgCUGCGGc -3'
miRNA:   3'- -GCGCCGCUCgCA--------------CGA-GCGgC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 78472 0.66 0.627132
Target:  5'- -uCGGCGAGgugaugcggaugcuCGUGaaCGCCGCCGUGGu -3'
miRNA:   3'- gcGCCGCUC--------------GCACgaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 89193 0.66 0.624223
Target:  5'- gGCGGagaGGGCGagaguucucccucgcUGCUguUGCCGCCGCc- -3'
miRNA:   3'- gCGCCg--CUCGC---------------ACGA--GCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 52817 0.66 0.620345
Target:  5'- uGCGGCcGGCGUugGC-CGCgaGCCAgCGGu -3'
miRNA:   3'- gCGCCGcUCGCA--CGaGCGg-CGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 58122 0.66 0.620345
Target:  5'- gGCGGgGucGCGUcGCccgCGCCGUaCGCGGc -3'
miRNA:   3'- gCGCCgCu-CGCA-CGa--GCGGCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 58415 0.66 0.620345
Target:  5'- gCGCaGCuGGGCGUGCg-GCaGCCACGc -3'
miRNA:   3'- -GCGcCG-CUCGCACGagCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 62767 0.66 0.620345
Target:  5'- uGCGGCccGUGUGCcauuccaucUCGCCccaccCCACGGc -3'
miRNA:   3'- gCGCCGcuCGCACG---------AGCGGc----GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 103632 0.66 0.620345
Target:  5'- aCGCGGUGgcGGCGgcGCUgGCgGaCGCGGa -3'
miRNA:   3'- -GCGCCGC--UCGCa-CGAgCGgCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 115214 0.66 0.620345
Target:  5'- gCGCGcGCGAuCGUgGC-CGCUGCCGCc- -3'
miRNA:   3'- -GCGC-CGCUcGCA-CGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 116528 0.66 0.620345
Target:  5'- cCGCGuCGuagacGCGgaaCUgGCCGCCGCGGu -3'
miRNA:   3'- -GCGCcGCu----CGCac-GAgCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 122688 0.66 0.620345
Target:  5'- gCGCGGCGGcCGUggaGCUCGC-GCUcuuCGGg -3'
miRNA:   3'- -GCGCCGCUcGCA---CGAGCGgCGGu--GCC- -5'
29371 3' -62.9 NC_006151.1 + 135533 0.66 0.620345
Target:  5'- gGCGGCGAGCGggGCggggaggaucaCGuuGagCACGGc -3'
miRNA:   3'- gCGCCGCUCGCa-CGa----------GCggCg-GUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.