miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 5' -53 NC_006151.1 + 127383 0.66 0.979538
Target:  5'- cGGGGGUgGCGGGGGCcgCggcCGAGuCGa -3'
miRNA:   3'- cCCCUCA-UGCUCUCGaaGaa-GCUC-GC- -5'
29372 5' -53 NC_006151.1 + 55346 0.66 0.979538
Target:  5'- aGGcGGAcaACGGGGGCcUCcgCGAGCa -3'
miRNA:   3'- -CC-CCUcaUGCUCUCGaAGaaGCUCGc -5'
29372 5' -53 NC_006151.1 + 99052 0.66 0.979312
Target:  5'- cGGGGAcgcguacGUGCGcGAGCUgCgccCGGGCa -3'
miRNA:   3'- -CCCCU-------CAUGCuCUCGAaGaa-GCUCGc -5'
29372 5' -53 NC_006151.1 + 67459 0.66 0.977196
Target:  5'- gGGGGGGU-CGcAGAGCgcgCgcagcagCGGGCa -3'
miRNA:   3'- -CCCCUCAuGC-UCUCGaa-Gaa-----GCUCGc -5'
29372 5' -53 NC_006151.1 + 76684 0.66 0.977196
Target:  5'- uGGGGAGcagggGgGAGAGUggcg-CGGGCGc -3'
miRNA:   3'- -CCCCUCa----UgCUCUCGaagaaGCUCGC- -5'
29372 5' -53 NC_006151.1 + 130941 0.66 0.977196
Target:  5'- cGGGGGcgGCGGGGGg-UCgcgCGGGCGc -3'
miRNA:   3'- cCCCUCa-UGCUCUCgaAGaa-GCUCGC- -5'
29372 5' -53 NC_006151.1 + 139551 0.66 0.974663
Target:  5'- cGGGGA--GCGAgGAGCggcgcccggUCcgCGAGCGc -3'
miRNA:   3'- -CCCCUcaUGCU-CUCGa--------AGaaGCUCGC- -5'
29372 5' -53 NC_006151.1 + 722 0.66 0.971931
Target:  5'- cGGGGGUccgcggGCGGGGGCUUCcgcucCGcGGCGc -3'
miRNA:   3'- cCCCUCA------UGCUCUCGAAGaa---GC-UCGC- -5'
29372 5' -53 NC_006151.1 + 71559 0.66 0.968993
Target:  5'- aGGGGGGgGCGAGGGgga---CGGGCGg -3'
miRNA:   3'- -CCCCUCaUGCUCUCgaagaaGCUCGC- -5'
29372 5' -53 NC_006151.1 + 20481 0.66 0.965843
Target:  5'- gGGGGGGcGCGGGGGUcg--UCG-GCGg -3'
miRNA:   3'- -CCCCUCaUGCUCUCGaagaAGCuCGC- -5'
29372 5' -53 NC_006151.1 + 11729 0.67 0.958507
Target:  5'- aGGGGGGaGCGGGGGUgagggggaggggugCGGGCGa -3'
miRNA:   3'- -CCCCUCaUGCUCUCGaagaa---------GCUCGC- -5'
29372 5' -53 NC_006151.1 + 127922 0.67 0.950999
Target:  5'- cGGGGA--GCGGGGGCggCgagaCGGGCa -3'
miRNA:   3'- -CCCCUcaUGCUCUCGaaGaa--GCUCGc -5'
29372 5' -53 NC_006151.1 + 34645 0.67 0.946703
Target:  5'- cGGGGGUcGCGGGAGggUC-UCGGGgGu -3'
miRNA:   3'- cCCCUCA-UGCUCUCgaAGaAGCUCgC- -5'
29372 5' -53 NC_006151.1 + 16666 0.68 0.932363
Target:  5'- gGGGGAGUcCGGGGGagUCcUCG-GCGg -3'
miRNA:   3'- -CCCCUCAuGCUCUCgaAGaAGCuCGC- -5'
29372 5' -53 NC_006151.1 + 27455 0.69 0.91581
Target:  5'- cGGuGGGU-CGGGGGCgggCggUCGAGCGg -3'
miRNA:   3'- cCC-CUCAuGCUCUCGaa-Ga-AGCUCGC- -5'
29372 5' -53 NC_006151.1 + 8550 0.69 0.909801
Target:  5'- gGGGGuGUGCGAGAGa------GAGCGu -3'
miRNA:   3'- -CCCCuCAUGCUCUCgaagaagCUCGC- -5'
29372 5' -53 NC_006151.1 + 10049 0.69 0.909801
Target:  5'- cGGGGGaGCGGGAGCggCUccCGAGUc -3'
miRNA:   3'- cCCCUCaUGCUCUCGaaGAa-GCUCGc -5'
29372 5' -53 NC_006151.1 + 22512 0.69 0.897055
Target:  5'- aGGGGGGgaaucGCGGGGGag---UCGGGCGg -3'
miRNA:   3'- -CCCCUCa----UGCUCUCgaagaAGCUCGC- -5'
29372 5' -53 NC_006151.1 + 32132 0.7 0.874696
Target:  5'- gGGGGAGa--GAGAGCgaggggcgCGAGCGc -3'
miRNA:   3'- -CCCCUCaugCUCUCGaagaa---GCUCGC- -5'
29372 5' -53 NC_006151.1 + 33147 0.71 0.836931
Target:  5'- cGGGcGAGUGCGAG-GCgggUCgg-GGGCGg -3'
miRNA:   3'- -CCC-CUCAUGCUCuCGa--AGaagCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.