Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29373 | 3' | -54.5 | NC_006151.1 | + | 137695 | 1.1 | 0.003447 |
Target: 5'- gCCAAGAUGGGCUUCCGCGUGUGCACGc -3' miRNA: 3'- -GGUUCUACCCGAAGGCGCACACGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 65816 | 0.73 | 0.610876 |
Target: 5'- gCCGcgguGGAUGGGCggCCGCGccaGCGCGg -3' miRNA: 3'- -GGU----UCUACCCGaaGGCGCacaCGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 141620 | 0.72 | 0.68294 |
Target: 5'- gCCGGGAUcGGGCgggucgcugCCGCGgcgGCGCGg -3' miRNA: 3'- -GGUUCUA-CCCGaa-------GGCGCacaCGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 44403 | 0.72 | 0.693134 |
Target: 5'- gCCGAGGaGGGaggggCGCGUGUGCAUGu -3' miRNA: 3'- -GGUUCUaCCCgaag-GCGCACACGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 82605 | 0.72 | 0.697198 |
Target: 5'- aCAGGGUGGGCccgcgcgcgggcgCCGCGgUGgGCGCGg -3' miRNA: 3'- gGUUCUACCCGaa-----------GGCGC-ACaCGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 55352 | 0.71 | 0.733301 |
Target: 5'- aCAAcggGGGCcUCCGCGagcagGUGCGCGa -3' miRNA: 3'- gGUUcuaCCCGaAGGCGCa----CACGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 134236 | 0.71 | 0.762522 |
Target: 5'- aCGGGAUcguggacgcGGGCUUUCGCGgcgagGUGCAgGc -3' miRNA: 3'- gGUUCUA---------CCCGAAGGCGCa----CACGUgC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 15431 | 0.7 | 0.790685 |
Target: 5'- uCCGAGuuuaGCUUCCGCGgcucgGUGUGCGa -3' miRNA: 3'- -GGUUCuaccCGAAGGCGCa----CACGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 7298 | 0.69 | 0.817542 |
Target: 5'- cUCAcGGUGcaaGCUUCCGUGUGUcuGCACGu -3' miRNA: 3'- -GGUuCUACc--CGAAGGCGCACA--CGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 60209 | 0.69 | 0.826164 |
Target: 5'- -gAAGAUGGGCUcgCCGCGc--GCGCc -3' miRNA: 3'- ggUUCUACCCGAa-GGCGCacaCGUGc -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 665 | 0.69 | 0.832932 |
Target: 5'- gCCGGGgcGGGC-UCCGCGgaucgcaucgGCGCGc -3' miRNA: 3'- -GGUUCuaCCCGaAGGCGCaca-------CGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 25202 | 0.68 | 0.89483 |
Target: 5'- cCCAAGAUGGGCguggccUCgGCGgagcCGCGa -3' miRNA: 3'- -GGUUCUACCCGa-----AGgCGCacacGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 67869 | 0.67 | 0.9137 |
Target: 5'- gCCGAGGUGGcGCgcgcgccagcCCGCGgg-GCACa -3' miRNA: 3'- -GGUUCUACC-CGaa--------GGCGCacaCGUGc -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 8501 | 0.67 | 0.9137 |
Target: 5'- gCGGGGaGGGUgucgUCUGUGUgucuGUGCGCGg -3' miRNA: 3'- gGUUCUaCCCGa---AGGCGCA----CACGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 89465 | 0.67 | 0.919511 |
Target: 5'- aCCAGca-GGGC--CCGCGUcacGUGCGCGg -3' miRNA: 3'- -GGUUcuaCCCGaaGGCGCA---CACGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 117584 | 0.67 | 0.925079 |
Target: 5'- -gAGGAUGGGC---CGCGUG-GCGCc -3' miRNA: 3'- ggUUCUACCCGaagGCGCACaCGUGc -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 117117 | 0.67 | 0.925079 |
Target: 5'- aCCAGGccGGcGCacaccgUCuCGCGgagGUGCGCGa -3' miRNA: 3'- -GGUUCuaCC-CGa-----AG-GCGCa--CACGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 10936 | 0.66 | 0.930404 |
Target: 5'- gCCgAGGGUGGGCgcgcgugUCCGUGUGagaGUuuACGg -3' miRNA: 3'- -GG-UUCUACCCGa------AGGCGCACa--CG--UGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 75427 | 0.66 | 0.935486 |
Target: 5'- cCCGGcGUGGGCgcgaagcugCCgGCGUG-GCGCGc -3' miRNA: 3'- -GGUUcUACCCGaa-------GG-CGCACaCGUGC- -5' |
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29373 | 3' | -54.5 | NC_006151.1 | + | 3255 | 0.66 | 0.935486 |
Target: 5'- gCgGAGcgGGGCg-CCGCG-GcGCGCGg -3' miRNA: 3'- -GgUUCuaCCCGaaGGCGCaCaCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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