miRNA display CGI


Results 81 - 100 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 54694 0.67 0.513506
Target:  5'- cGUCGCCGgcaGCGUGcugGGCCaGgGCCu -3'
miRNA:   3'- -CAGCGGCa--UGCGCca-CCGGcCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 73112 0.67 0.513506
Target:  5'- cUCGCCGgcggcgcgcccGCGCGGguuGCaCGcGCGCCGa -3'
miRNA:   3'- cAGCGGCa----------UGCGCCac-CG-GC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 62431 0.67 0.504323
Target:  5'- aUCGUCGUGCGCc-UGGUCcGCGCCu -3'
miRNA:   3'- cAGCGGCAUGCGccACCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 56309 0.67 0.504323
Target:  5'- -aCGCC--GCGCGGUgccugagccugGGCCGGUgGCUGg -3'
miRNA:   3'- caGCGGcaUGCGCCA-----------CCGGCCG-CGGC- -5'
29373 5' -64.1 NC_006151.1 + 17711 0.67 0.504323
Target:  5'- -cUGCUGUguGCGCccgGGUGcGCCGGgGCCc -3'
miRNA:   3'- caGCGGCA--UGCG---CCAC-CGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 104180 0.67 0.486178
Target:  5'- -cCGCCGaGCGCGc--GCuCGGCGCCa -3'
miRNA:   3'- caGCGGCaUGCGCcacCG-GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 52875 0.67 0.495213
Target:  5'- cUCGCgGUAC-CGGUcGaaGGCGCCGu -3'
miRNA:   3'- cAGCGgCAUGcGCCAcCggCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 88889 0.67 0.495213
Target:  5'- cUCGUCaaaGUACuCGG-GGUCGGCGUCGg -3'
miRNA:   3'- cAGCGG---CAUGcGCCaCCGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 92538 0.67 0.498848
Target:  5'- -gCGCCGgACGUggacucggugcagcaGGUGGCCGaGuCGCUGg -3'
miRNA:   3'- caGCGGCaUGCG---------------CCACCGGC-C-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 114842 0.67 0.501583
Target:  5'- -aCGCCGUGCGCgaccacguaggcggGGUccucGGCCaGGuCGCUGa -3'
miRNA:   3'- caGCGGCAUGCG--------------CCA----CCGG-CC-GCGGC- -5'
29373 5' -64.1 NC_006151.1 + 116530 0.67 0.504323
Target:  5'- -gCGUCGUagACGCGGaacUGGCCGccgcgguugaaGCGCCc -3'
miRNA:   3'- caGCGGCA--UGCGCC---ACCGGC-----------CGCGGc -5'
29373 5' -64.1 NC_006151.1 + 117247 0.67 0.504323
Target:  5'- cGUCGgCGggcccgagGCGCGGgccgcgcgcGGCCGcCGCCGa -3'
miRNA:   3'- -CAGCgGCa-------UGCGCCa--------CCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 5239 0.67 0.504323
Target:  5'- -gCGCCGcGCgGCGGcGGCgGGgGCCc -3'
miRNA:   3'- caGCGGCaUG-CGCCaCCGgCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 20115 0.68 0.45956
Target:  5'- -gCGCCccgGCGaCGGggcuggggGGCgGGCGCCGc -3'
miRNA:   3'- caGCGGca-UGC-GCCa-------CCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 38889 0.68 0.45956
Target:  5'- cUCGCCGccUACuGCccgcccgaGGUGGCCcGCGCCu -3'
miRNA:   3'- cAGCGGC--AUG-CG--------CCACCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 102110 0.68 0.45956
Target:  5'- gGUCG-CGUGCGCG--GGCCGGaGCCu -3'
miRNA:   3'- -CAGCgGCAUGCGCcaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 102356 0.68 0.45956
Target:  5'- cGUgGCCGgcgacgACGCGuccgcgcccGUGGCCaagcuGGCGCUGg -3'
miRNA:   3'- -CAgCGGCa-----UGCGC---------CACCGG-----CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 123029 0.68 0.45956
Target:  5'- -aCGCCGUGgCGUGGgcggaccugccGGCCgcGGCGCUGc -3'
miRNA:   3'- caGCGGCAU-GCGCCa----------CCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 127436 0.68 0.45956
Target:  5'- -gCGCuCGUGCGCGagaGCCGGCGgCGc -3'
miRNA:   3'- caGCG-GCAUGCGCcacCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 2108 0.68 0.45956
Target:  5'- --aGCgGgcCGCGG-GGCCGGCcgucGCCGc -3'
miRNA:   3'- cagCGgCauGCGCCaCCGGCCG----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.