miRNA display CGI


Results 101 - 120 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 5689 0.68 0.43289
Target:  5'- -cCGCCGUGCcggcgcuGCGGccaccgcugcUGGCUgugcugguGGCGCCGg -3'
miRNA:   3'- caGCGGCAUG-------CGCC----------ACCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 109735 0.68 0.425317
Target:  5'- cUCGCCGcuggagcggAUGCcGUGGCCGcCGCCGu -3'
miRNA:   3'- cAGCGGCa--------UGCGcCACCGGCcGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 103526 0.68 0.425317
Target:  5'- -aCGuCCGaccccgGCGCGcUGGUgGGCGCCGg -3'
miRNA:   3'- caGC-GGCa-----UGCGCcACCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 6403 0.68 0.425317
Target:  5'- -gCGCCGaGCGCGGaGaGCgGGCGgCGg -3'
miRNA:   3'- caGCGGCaUGCGCCaC-CGgCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 55882 0.68 0.425317
Target:  5'- -gCGCUGU-CGCGGcGGaCGuGCGCCGg -3'
miRNA:   3'- caGCGGCAuGCGCCaCCgGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 99575 0.68 0.425317
Target:  5'- -gCGCUGcUGCGCGaGguggcggcGGCCGaGCGCCGc -3'
miRNA:   3'- caGCGGC-AUGCGC-Ca-------CCGGC-CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 128003 0.68 0.442251
Target:  5'- cGUCGCgGU-CGCGG-GG-CGGCGgCGa -3'
miRNA:   3'- -CAGCGgCAuGCGCCaCCgGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 3988 0.68 0.45086
Target:  5'- --aGCCGgcCGCGGccacguUGGCCGGgGCg- -3'
miRNA:   3'- cagCGGCauGCGCC------ACCGGCCgCGgc -5'
29373 5' -64.1 NC_006151.1 + 127436 0.68 0.45956
Target:  5'- -gCGCuCGUGCGCGagaGCCGGCGgCGc -3'
miRNA:   3'- caGCG-GCAUGCGCcacCGGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 123029 0.68 0.45956
Target:  5'- -aCGCCGUGgCGUGGgcggaccugccGGCCgcGGCGCUGc -3'
miRNA:   3'- caGCGGCAU-GCGCCa----------CCGG--CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 102356 0.68 0.45956
Target:  5'- cGUgGCCGgcgacgACGCGuccgcgcccGUGGCCaagcuGGCGCUGg -3'
miRNA:   3'- -CAgCGGCa-----UGCGC---------CACCGG-----CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 102110 0.68 0.45956
Target:  5'- gGUCG-CGUGCGCG--GGCCGGaGCCu -3'
miRNA:   3'- -CAGCgGCAUGCGCcaCCGGCCgCGGc -5'
29373 5' -64.1 NC_006151.1 + 38889 0.68 0.45956
Target:  5'- cUCGCCGccUACuGCccgcccgaGGUGGCCcGCGCCu -3'
miRNA:   3'- cAGCGGC--AUG-CG--------CCACCGGcCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 20115 0.68 0.45956
Target:  5'- -gCGCCccgGCGaCGGggcuggggGGCgGGCGCCGc -3'
miRNA:   3'- caGCGGca-UGC-GCCa-------CCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 2108 0.68 0.45956
Target:  5'- --aGCgGgcCGCGG-GGCCGGCcgucGCCGc -3'
miRNA:   3'- cagCGgCauGCGCCaCCGGCCG----CGGC- -5'
29373 5' -64.1 NC_006151.1 + 104330 0.68 0.456941
Target:  5'- -aCGCCGU-CGCGGcgcccgucaucgGGUcgcucuuCGGCGCCGa -3'
miRNA:   3'- caGCGGCAuGCGCCa-----------CCG-------GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 116977 0.68 0.45086
Target:  5'- cGUCGCUGgACGUGaG-GcGCUGGUGCCGc -3'
miRNA:   3'- -CAGCGGCaUGCGC-CaC-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 137035 0.68 0.45086
Target:  5'- -cUGCCGgACGC-GUGccccCCGGCGCCGg -3'
miRNA:   3'- caGCGGCaUGCGcCACc---GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 56359 0.68 0.45086
Target:  5'- -cCGCCG-GCGCGGaaGCuaCGGCGCCu -3'
miRNA:   3'- caGCGGCaUGCGCCacCG--GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 43391 0.68 0.45086
Target:  5'- gGUgGCCGU-CGCucGUGGCCGGCaaagaugcgaagGCCa -3'
miRNA:   3'- -CAgCGGCAuGCGc-CACCGGCCG------------CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.