miRNA display CGI


Results 121 - 140 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29373 5' -64.1 NC_006151.1 + 104330 0.68 0.456941
Target:  5'- -aCGCCGU-CGCGGcgcccgucaucgGGUcgcucuuCGGCGCCGa -3'
miRNA:   3'- caGCGGCAuGCGCCa-----------CCG-------GCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 116977 0.68 0.45086
Target:  5'- cGUCGCUGgACGUGaG-GcGCUGGUGCCGc -3'
miRNA:   3'- -CAGCGGCaUGCGC-CaC-CGGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 102505 0.68 0.442251
Target:  5'- -aCGCCGcgGCGCGGgaccCCGGCGgCGu -3'
miRNA:   3'- caGCGGCa-UGCGCCacc-GGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 122482 0.68 0.442251
Target:  5'- --gGCCGgggACGCGGgcgagacggcGcGCCGGCGCgCGg -3'
miRNA:   3'- cagCGGCa--UGCGCCa---------C-CGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 128003 0.68 0.442251
Target:  5'- cGUCGCgGU-CGCGG-GG-CGGCGgCGa -3'
miRNA:   3'- -CAGCGgCAuGCGCCaCCgGCCGCgGC- -5'
29373 5' -64.1 NC_006151.1 + 3988 0.68 0.45086
Target:  5'- --aGCCGgcCGCGGccacguUGGCCGGgGCg- -3'
miRNA:   3'- cagCGGCauGCGCC------ACCGGCCgCGgc -5'
29373 5' -64.1 NC_006151.1 + 43391 0.68 0.45086
Target:  5'- gGUgGCCGU-CGCucGUGGCCGGCaaagaugcgaagGCCa -3'
miRNA:   3'- -CAgCGGCAuGCGc-CACCGGCCG------------CGGc -5'
29373 5' -64.1 NC_006151.1 + 56359 0.68 0.45086
Target:  5'- -cCGCCG-GCGCGGaaGCuaCGGCGCCu -3'
miRNA:   3'- caGCGGCaUGCGCCacCG--GCCGCGGc -5'
29373 5' -64.1 NC_006151.1 + 137035 0.68 0.45086
Target:  5'- -cUGCCGgACGC-GUGccccCCGGCGCCGg -3'
miRNA:   3'- caGCGGCaUGCGcCACc---GGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 18742 0.69 0.389465
Target:  5'- cGUCGCCGccgccggggccccACGgGGUgcccggggcccgGGCCGGgGCCGu -3'
miRNA:   3'- -CAGCGGCa------------UGCgCCA------------CCGGCCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 122453 0.69 0.392642
Target:  5'- -gCGgCGUccACgGCGGcGGCgGGCGCCGa -3'
miRNA:   3'- caGCgGCA--UG-CGCCaCCGgCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 20443 0.69 0.392642
Target:  5'- uUCGUCGga-GCGGggcucggGGgUGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCCa------CCgGCCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 60632 0.69 0.392642
Target:  5'- cGUCGUCGggGCGgGGcucccGGCCcGCGCCGc -3'
miRNA:   3'- -CAGCGGCa-UGCgCCa----CCGGcCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 97990 0.69 0.392642
Target:  5'- cUUGCCGg--GCGGcgUGGCCgcguaggcGGCGCCGg -3'
miRNA:   3'- cAGCGGCaugCGCC--ACCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 106661 0.69 0.392642
Target:  5'- -gCGCaCGUGCGCGa-GGCCGcggcgcucggcGCGCCGg -3'
miRNA:   3'- caGCG-GCAUGCGCcaCCGGC-----------CGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 96377 0.69 0.392642
Target:  5'- -cCGCCuccacgcgcGCGCGGU-GCCGGCGCaCGg -3'
miRNA:   3'- caGCGGca-------UGCGCCAcCGGCCGCG-GC- -5'
29373 5' -64.1 NC_006151.1 + 82587 0.69 0.400657
Target:  5'- cGUCGCCGaccaggACGaacaGGgugGGCCcgcgcgcgGGCGCCGc -3'
miRNA:   3'- -CAGCGGCa-----UGCg---CCa--CCGG--------CCGCGGC- -5'
29373 5' -64.1 NC_006151.1 + 122217 0.69 0.400657
Target:  5'- --aGCCGUGCGCGGUGuGCUucgaGGaGCUGu -3'
miRNA:   3'- cagCGGCAUGCGCCAC-CGG----CCgCGGC- -5'
29373 5' -64.1 NC_006151.1 + 75445 0.69 0.400657
Target:  5'- -cUGCCGgcgugGCGCGcGUagcGGUCGGCgGCCGg -3'
miRNA:   3'- caGCGGCa----UGCGC-CA---CCGGCCG-CGGC- -5'
29373 5' -64.1 NC_006151.1 + 131763 0.69 0.384731
Target:  5'- cGUCGCgGUcgcgacCGCGGccGCgGGCGCCGc -3'
miRNA:   3'- -CAGCGgCAu-----GCGCCacCGgCCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.